CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 3
extracellular 3
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93006	Soybean	cytosol	79.06	88.15
Solyc05g054940.2.1	Tomato	plastid	69.69	79.36
PGSC0003DMT400060185	Potato	plastid	69.69	79.36
VIT_13s0067g03530.t01	Wine grape	plastid	71.56	70.46
CDY70138	Canola	plastid	65.0	69.8
CDX75139	Canola	plastid	63.75	68.46
AT4G08790.1	Thale cress	plastid	65.31	68.08
GSMUA_Achr2P19050_001	Banana	cytosol	60.0	67.84
TraesCS5A01G108700.1	Wheat	plastid	64.69	66.56
TraesCS5D01G121200.1	Wheat	plastid	62.5	66.23
Os12t0502500-01	Rice	plastid	65.31	64.71
Bra037878.1-P	Field mustard	plastid	64.38	63.19
Zm00001d023729_P005	Maize	plastid	63.44	62.85
EES16018	Sorghum	plastid	62.81	61.09
TraesCS5B01G114100.1	Wheat	plastid, unclear	64.06	60.29
KRH52237	Soybean	nucleus	27.5	25.0
KRH26651	Soybean	cytosol	20.62	22.07
KRH22668	Soybean	cytosol	20.31	21.74
KRG89323	Soybean	plastid	15.62	21.64
KRH42198	Soybean	cytosol	20.0	21.4
KRH49832	Soybean	cytosol	18.44	14.46

Protein Annotations

MapMan:10.3.3.2.3	Gene3D:3.60.110.10	EMBL:ACUP02006723	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	EnsemblPlantsGene:GLYMA_10G292900
GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016810	UniProt:I1LFG0	InterPro:IPR003010	InterPro:IPR036526	EnsemblPlants:KRH36253	ProteinID:KRH36253
ProteinID:KRH36253.1	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF27	SUPFAM:SSF56317
UniParc:UPI00023CE093	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:51069463..51072259

Molecular Weight (calculated)

34633.6 Da

IEP (calculated)

7.073

GRAVY (calculated)

0.117

Length

320 amino acids

Sequence
(BLAST)

001: MFCVSVGVNF IGGFAFASGI PKSSVSATMA SNSVRVAAAQ MTSISDLAAN LATCSRLIKY SVLYCLSKEA ASAGAKLLCF PEAFSYVGTK DGDSVRVAEP
101: LDGPIMSHYC SLARESSIWL SLGGFQEKGS DPQRLSNTHV IVDDTGKIIS SYSKIHLFDV DVPGGRVYKE SSFTESGKDI VAVDSPVGRL GLSVCYDLRF
201: PEMYQLLRFQ HEAQVLLVPA AFTTVTGEAH WEILLRARAI ETQCYVIAAA QAGKHNDKRE SYGDTLIIDP WGTIVGRLPD RLSTGIVVAD IDLSFVDSVR
301: EKMPIAKQRK PIGFWKAASL

Best Arabidopsis Sequence Match ( AT4G08790.1 )
(BLAST)

001: MNAYSVSLDF TKPSLFTRIT LSSQIPLTMA TTVNKTVRVA AAQMTSVNDL MTNFATCSRL VQEAALAGAK LICFPENFSF VGDKEGESVK IAEPLDGPVM
101: ERYCSLARDS NIWLSLGGFQ ERFDDTHLCN THVVIDDAGM IRDTYQKMHL FDVDVPGGSS YKESSFTVPG TKIVSVDSPV GRLGLTVCYD LRFPKIYQQL
201: RFEQKAQVLL VPSAFTKVTG EAHWEILLRA RAIETQCYVI AAAQAGKHNE KRESYGDTLI IDPWGTVVGR LPDRVSTGIV VADIDFSLID SVRTKMPIDK
301: QRVSIDL

Arabidopsis Description

NLP2Nitrilase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.