CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91177	Canola	cytosol, extracellular, nucleus	30.68	87.8
GSMUA_Achr1P21960_001	Banana	cytosol	69.32	79.48
KRG89323	Soybean	plastid	51.7	78.79
CDX91178	Canola	plastid	36.93	75.58
Os03t0175600-01	Rice	mitochondrion	65.34	74.19
VIT_04s0008g01690.t01	Wine grape	plastid	76.7	74.18
Bra006138.1-P	Field mustard	plastid	75.28	72.8
CDX78463	Canola	plastid	75.28	72.8
AT5G12040.1	Thale cress	plastid	75.85	72.36
CDX70441	Canola	plastid	75.28	72.21
KXG40066	Sorghum	plastid	69.89	69.69
HORVU4Hr1G076100.13	Barley	plastid	67.61	68.79
Solyc08g062190.2.1	Tomato	plastid	72.44	68.73
TraesCS4B01G292100.1	Wheat	plastid	67.33	68.1
TraesCS4D01G290800.1	Wheat	plastid	67.05	68.01
TraesCS4A01G012200.1	Wheat	golgi, unclear	67.05	67.82
CDX97163	Canola	plastid	71.88	66.06
PGSC0003DMT400050357	Potato	cytosol	66.19	65.63
GSMUA_Achr1P12420_001	Banana	mitochondrion	64.49	63.41
Bra008919.1-P	Field mustard	plastid	70.45	57.67
CDX69711	Canola	plastid	70.17	57.44
Zm00001d027876_P004	Maize	plastid	67.05	54.25
Zm00001d048292_P003	Maize	plastid	60.23	49.77
KRG93006	Soybean	cytosol	22.73	27.87
KRH36253	Soybean	nucleus	25.0	27.5
KRH26651	Soybean	cytosol	21.88	25.75
KRH42198	Soybean	cytosol	21.02	24.75
KRH22668	Soybean	cytosol	20.74	24.41
KRH49832	Soybean	cytosol	23.01	19.85

Protein Annotations

EntrezGene:100817195	Gene3D:3.60.110.10	MapMan:4.1.2.1.4	EMBL:ACUP02003414	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
EnsemblPlantsGene:GLYMA_06G055100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	GO:GO:0016787	GO:GO:0016810	UniProt:I1K8F4	InterPro:IPR003010
InterPro:IPR036526	EnsemblPlants:KRH52237	ProteinID:KRH52237	ProteinID:KRH52237.1	PFAM:PF00795	ScanProsite:PS01227
PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317	InterPro:UPF0012_CS	UniParc:UPI000233A43A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:4160509..4166027

Molecular Weight (calculated)

38560.2 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.141

Length

352 amino acids

Sequence
(BLAST)

001: MKASALLNLK SFTLSRHSPT SNSFFPPFLC PSHPRHRRIH HSRNPIMSAT SVNSERARAP PAIPLPPPPL SNFKIGLCQL SVSPDKDSNI AHARTAIQDA
101: ASKGAQLVLL PEIWNSPYSN DSFPVYAEDI DAGASPSTAM LSELSRLLKI TIVGGSIPER SGGLLYNTCC VFGTDGNLLA KHRKIHLFDI DIPGKITFIE
201: SKTLTAGETP TIVDTEVGRI GIGICYDIRF PELAMIYAAR GAHLLCYPGA FNMTTGPLHW ELLQRARATD NQLYVATCSP ARDTGSGYVA WGHSTLVGPF
301: GEVLATTEHE EAIIIAEIDY SILEQRRTNL PVTKQRRGDL YQLVDFQRLN SQ

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.