Factsheet for Bra006138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78463	Canola	plastid	99.73	99.73
AT5G12040.1	Thale cress	plastid	95.05	93.77
GSMUA_Achr1P21960_001	Banana	cytosol	69.78	82.74
Os03t0175600-01	Rice	mitochondrion	65.66	77.1
VIT_04s0008g01690.t01	Wine grape	plastid	76.1	76.1
KRH52237	Soybean	nucleus	72.8	75.28
Solyc08g062190.2.1	Tomato	plastid	74.18	72.78
KXG40066	Sorghum	plastid	68.96	71.1
HORVU4Hr1G076100.13	Barley	plastid	66.76	70.23
TraesCS4B01G292100.1	Wheat	plastid	66.21	69.25
TraesCS4D01G290800.1	Wheat	plastid	65.93	69.16
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.93	68.97
GSMUA_Achr1P12420_001	Banana	mitochondrion	66.48	67.6
Bra008919.1-P	Field mustard	plastid	75.82	64.19
PGSC0003DMT400050357	Potato	cytosol	62.36	63.94
KRG89323	Soybean	plastid	39.56	62.34
Zm00001d027876_P004	Maize	plastid	65.66	54.94
Zm00001d048292_P003	Maize	plastid	59.62	50.94
Bra037878.1-P	Field mustard	plastid	23.63	26.38
Bra034353.1-P	Field mustard	cytosol	20.88	25.59
Bra012018.1-P	Field mustard	cytosol	4.12	19.23
Bra037776.1-P	Field mustard	cytosol	21.43	19.12
Bra024290.1-P	Field mustard	cytosol	20.33	18.14

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	EnsemblPlantsGene:Bra006138	EnsemblPlants:Bra006138.1	EnsemblPlants:Bra006138.1-P	InterPro:C-N_Hydrolase
InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010	InterPro:IPR036526	UniProt:M4CPJ9	PFAM:PF00795
PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317	UniParc:UPI000253F977	SEG:seg

Description

AT5G12040 (E=1e-168) | carbon-nitrogen hydrolase family protein

Coordinates

chrA03:+:2173243..2175446

Molecular Weight (calculated)

39684.6 Da

IEP (calculated)

8.354

GRAVY (calculated)

-0.151

Length

364 amino acids

Sequence
(BLAST)

001: MKSAVSSSLF FHSKNLLKPN PLSRLESLFL PKPSLRSIVK LPSSSTTSGL RSISSSSMAS SFKPEQARVP SALPLPAPPL TKFNIGLCQL SVTADKSRNI
101: SHAKKAIEEA ASKGAKLVLL PEIWNSPYSN DSFPVYAEEI DAGGDASPST AMLSEVSKRL EITIIGGSIP ERVGDRLYNT CCVFGSDGEL KAKHRKIHLF
201: DIDIPGKITF MESKTLTAGE TPTIVDTDVG RIGIGICYDI RFQELAMIYA ARGAHLLCYP GAFNMTTGPL HWELLQRARA TDNQLYVATC SPARDSGAGY
301: TAWGHSTLIG PFGEVLATTE HEEAIIIAEI DYSILEQRRT SLPLNKQRRG DLYQLVDVQR LNSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.