Factsheet for PGSC0003DMT400050357

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041280.2.1	Tomato	plastid	73.52	72.1
GSMUA_Achr1P21960_001	Banana	cytosol	61.97	71.66
CDX91178	Canola	plastid	33.52	69.19
CDX91177	Canola	cytosol, extracellular, nucleus	23.38	67.48
Os03t0175600-01	Rice	mitochondrion	58.59	67.1
KRH52237	Soybean	nucleus	65.63	66.19
VIT_04s0008g01690.t01	Wine grape	plastid	64.79	63.19
Bra006138.1-P	Field mustard	plastid	63.94	62.36
CDX78463	Canola	plastid	63.94	62.36
AT5G12040.1	Thale cress	plastid	64.51	62.06
CDX70441	Canola	plastid	63.94	61.85
HORVU4Hr1G076100.13	Barley	plastid	60.28	61.85
TraesCS4B01G292100.1	Wheat	plastid	60.56	61.78
TraesCS4D01G290800.1	Wheat	plastid	60.28	61.67
TraesCS4A01G012200.1	Wheat	golgi, unclear	60.28	61.49
KXG40066	Sorghum	plastid	61.13	61.47
KRG89323	Soybean	plastid	39.15	60.17
GSMUA_Achr1P12420_001	Banana	mitochondrion	59.72	59.22
CDX97163	Canola	plastid	60.56	56.14
PGSC0003DMT400013262	Potato	plastid	36.06	55.9
PGSC0003DMT400013266	Potato	plastid	46.48	54.1
Bra008919.1-P	Field mustard	plastid	60.85	50.23
CDX69711	Canola	plastid	60.56	50.0
Zm00001d027876_P004	Maize	plastid	60.28	49.2
Zm00001d048292_P003	Maize	plastid	50.99	42.49
PGSC0003DMT400060185	Potato	plastid	21.97	27.76
PGSC0003DMT400067716	Potato	cytosol	18.59	22.0
PGSC0003DMT400074637	Potato	cytosol	18.87	16.34

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787
GO:GO:0016810	GO:GO:0050152	InterPro:IPR003010	InterPro:IPR036526	UniProt:M1BQ62	PFAM:PF00795
EnsemblPlantsGene:PGSC0003DMG400019574	PGSC:PGSC0003DMG400019574	EnsemblPlants:PGSC0003DMT400050357	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30
SUPFAM:SSF56317	UniParc:UPI0002967B58	SEG:seg	:	:	:

Description

Carbon-nitrogen hydrolase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019574]

Coordinates

chr7:+:37667698..37677178

Molecular Weight (calculated)

39152.6 Da

IEP (calculated)

4.451

GRAVY (calculated)

-0.419

Length

355 amino acids

Sequence
(BLAST)

001: MSRVRFNTND STYVDDTSSD IDSNVQLDHE SLERRYGDIN PNLDEYSGEE VEVNPGEEDL EDTPISPVTE VPTETTNSTE QNCGSPPHIP PTREKFKIAL
101: CQLSVATDKE RNIAHAQQAI EDAADKGAQL ILLPEIWNSP YSNDSFPVYA EDIDAGGDAS PSTRMLSEVS RSRKITIIGG SIPERSGDKL YNSCCVFGTD
201: GKLLAKHRKI HLFDIDIPGK MTFKESRTLT AGERPTIVDT EVGRIGIGIC YDIRFQELAA IYAARGAHLL CYPGAFNMTT GPLHWELLQR ARAADCQLYV
301: ATCSPARDGG SSYVAWGHST LVGPFGEVLV TTEHEETTLI AEIDYSVIEQ RRAYL

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.