Factsheet for PGSC0003DMT400067716

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 3
extracellular 2
golgi 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	99.33	99.33
VIT_06s0080g00560.t01	Wine grape	cytosol	86.0	86.87
KRH22668	Soybean	cytosol	86.0	86.29
KRH42198	Soybean	cytosol	85.67	85.95
GSMUA_Achr6P19390_001	Banana	cytosol	79.33	85.3
KRH26651	Soybean	cytosol	85.0	85.28
CDX77117	Canola	cytosol	84.67	84.95
Bra034353.1-P	Field mustard	cytosol	84.0	84.85
CDY30547	Canola	cytosol	84.0	84.85
EES05187	Sorghum	cytosol	80.33	80.87
TraesCS5D01G031200.1	Wheat	golgi	80.67	80.4
TraesCS5A01G024500.1	Wheat	cytosol	80.33	80.33
HORVU5Hr1G006730.1	Barley	cytosol, mitochondrion	80.33	80.07
TraesCS5B01G022300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.0	79.73
Os02t0533900-01	Rice	plasma membrane	79.33	79.07
Zm00001d016704_P001	Maize	extracellular	79.0	79.0
AT2G27450.2	Thale cress	cytosol	85.0	78.22
Bra012018.1-P	Field mustard	cytosol	17.67	67.95
CDX71452	Canola	plastid	31.67	42.99
PGSC0003DMT400013266	Potato	plastid	24.67	24.26
PGSC0003DMT400060185	Potato	plastid	22.33	23.84
PGSC0003DMT400013262	Potato	plastid	17.33	22.71
PGSC0003DMT400074637	Potato	cytosol	29.33	21.46
PGSC0003DMT400050357	Potato	cytosol	22.0	18.59

Protein Annotations

KEGG:00330+3.5.1.53	Gene3D:3.60.110.10	MapMan:8.1.1.3	ProteinID:ABA40443	ProteinID:ABA40443.1	InterPro:C-N_Hydrolase
InterPro:C-N_Hydrolase_sf	EMBL:DQ191642	GO:GO:0003674	GO:GO:0003824	GO:GO:0006596	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0016810
GO:GO:0033388	GO:GO:0050126	InterPro:IPR003010	InterPro:IPR036526	UniProt:M1CHR3	InterPro:N-carbamoylputrescine_amidase
PFAM:PF00795	EnsemblPlantsGene:PGSC0003DMG400026336	PGSC:PGSC0003DMG400026336	EnsemblPlants:PGSC0003DMT400067716	PFscan:PS50263	PANTHER:PTHR43674
PANTHER:PTHR43674:SF3	SUPFAM:SSF56317	TIGRFAMs:TIGR03381	UniParc:UPI0002965D30	:	:

Description

N-carbamoylputrescine amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400026336]

Coordinates

chr11:-:40459411..40468128

Molecular Weight (calculated)

33421.6 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.291

Length

300 amino acids

Sequence
(BLAST)

001: MAEKNRLVTV AALQFACTDD VSTNVATAER LVRAAHQKGA NIILIQELFE GYYFCQAQKE EFFHRAKPYQ GHPTIVRMQN LAKELGVVIP VSFFEEANNA
101: HYNSVAIIDA DGTDLGLYRK SHIPDGPGYQ EKFYFNPGDT GFKVFQTKYA KIGVAICWDQ WFPEAARAMA LQGAEVLFYP TAIGSEPQDD GLDSRDHWRR
201: VMQGHAGANV VPLVASNRIG KEIIETEHGN SEITFYGYSF IAGPTGELVA AAGDKEEAVL VAQFDLDKIK SKRHGWGVYR DRRPDLYKVL LTLDGSNPVK

Best Arabidopsis Sequence Match ( AT2G27450.1 )
(BLAST)

001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL

Arabidopsis Description

CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.