Factsheet for PGSC0003DMT400013266

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013262	Potato	plastid	73.11	97.38
Solyc06g064880.2.1	Tomato	plastid	94.43	94.43
HORVU7Hr1G034840.14	Barley	cytosol	45.57	57.2
TraesCS7A01G166700.1	Wheat	cytosol	43.28	56.9
TraesCS7D01G167300.1	Wheat	plastid	53.11	55.86
TraesCS7B01G071000.1	Wheat	cytosol, extracellular, mitochondrion, plastid	52.13	55.21
TraesCS7B01G071300.1	Wheat	cytosol, extracellular, mitochondrion, plastid	51.8	55.05
KXG19560	Sorghum	cytosol	51.8	51.97
PGSC0003DMT400050357	Potato	cytosol	54.1	46.48
Os06t0206000-00	Rice	cytosol, mitochondrion, plastid	46.23	43.38
PGSC0003DMT400067716	Potato	cytosol	24.26	24.67
PGSC0003DMT400060185	Potato	plastid	22.62	24.56
PGSC0003DMT400074637	Potato	cytosol	22.3	16.59

Protein Annotations

EntrezGene:102599407	Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810
InterPro:IPR003010	InterPro:IPR036526	UniProt:M1A2L2	PFAM:PF00795	EnsemblPlantsGene:PGSC0003DMG402005180	PGSC:PGSC0003DMG402005180
EnsemblPlants:PGSC0003DMT400013266	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF23	SUPFAM:SSF56317	UniParc:UPI0002966795
RefSeq:XP_006356509.1	:	:	:	:	:

Description

Carbon-nitrogen hydrolase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402005180]

Coordinates

chr6:-:47253306..47257089

Molecular Weight (calculated)

33168.6 Da

IEP (calculated)

4.793

GRAVY (calculated)

-0.039

Length

305 amino acids

Sequence
(BLAST)

001: MATVAVQSFV SAPLQVPKVT QFKIGICQLK VTTEKSANIF NARSMIQAAA EQGASLILLP EMWNCPYSTD LFAKFAEDFS DIDSAPSLLM LSEVASSLGV
101: TIIGGSIPEK DAGQLYNSCP VFGPNGELKA KHRKIHLFDM GKPLPGEVQF KESDNISAGE KPTVVDTDCG RIGIGICHDI RFPELAMSYS ARGAHLVCYP
201: GAFNMSTGAT LWELEQRTRA VDNQLYVASC SPSRDSAGSY MIWGHSTVVG PMGEIIATTG HEEAVLIAEI DYAVIQWTRE SLPLESQKHN DIYQFVDLLR
301: ESPNS

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.