Factsheet for Solyc06g064880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013266	Potato	plastid	94.43	94.43
PGSC0003DMT400013262	Potato	plastid	69.84	93.01
HORVU7Hr1G034840.14	Barley	cytosol	45.25	56.79
TraesCS7A01G166700.1	Wheat	cytosol	42.95	56.47
TraesCS7D01G167300.1	Wheat	plastid	52.46	55.17
TraesCS7B01G071000.1	Wheat	cytosol, extracellular, mitochondrion, plastid	51.48	54.51
TraesCS7B01G071300.1	Wheat	cytosol, extracellular, mitochondrion, plastid	51.15	54.36
KXG19560	Sorghum	cytosol	51.15	51.32
Solyc07g041280.2.1	Tomato	plastid	57.7	48.62
Solyc08g062190.2.1	Tomato	plastid	58.03	47.71
Os06t0206000-00	Rice	cytosol, mitochondrion, plastid	46.23	43.38
Solyc05g054940.2.1	Tomato	plastid	22.95	24.91
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	23.93	24.33
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	21.97	16.34

Protein Annotations

EnsemblPlants:Solyc06g064880.2.1	EnsemblPlantsGene:Solyc06g064880.2	Gene3D:3.60.110.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088	PANTHER:PTHR23088:SF23	PFAM:PF00795	PFscan:PS50263
SEG:seg	SUPFAM:SSF56317	UniParc:UPI00027670E8	UniProt:K4C7B8	MapMan:4.1.2.1.4	:

Description

No Description!

Coordinates

chr6:+:40442817..40445934

Molecular Weight (calculated)

33259.8 Da

IEP (calculated)

4.878

GRAVY (calculated)

0.029

Length

305 amino acids

Sequence
(BLAST)

001: MATVAVQSFV SAPLQIPNVT QFKIGICQLI VTTEKSANIF NARSLIQTAA EQGATLILLP EMWNCPYSTD LFAKFAEEFS DIDSAPSLLM LSEVASSLGV
101: TIIGGSIPEK DAGQLYNSCP VFGPNGELKA KHRKIHLFDM GKPLPGEVQF KESVNISAGE KPTVVDTDFG RIGIGICHDI RFPELAMSYS ARGAHLICYP
201: GAFNMSTGAT LWELEQRTRA VDNQLYVASC SLSRDSASSY MIWGHSTVVG PMGKIIATTG HEEAALIAEI DYAAIQWTRE SLPLESQKRN DIYQFVDLLR
301: ESLNS

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.