Factsheet for Solyc07g041280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 18385165

plastid: 20363867
extracellular: 22364583

gfp PMID: 18385165 doi

RU Rehman, E Stigliano, GW Lycett, L Sticher, F Sbano, M Faraco, G Dalessandro, GP Di Sansebastiano

Di.S.Te.B.A., Università del Salento, via prov. Lecce-Monteroni, 73100 Lecce, Italy.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	67.96	80.13
Os03t0175600-01	Rice	mitochondrion	63.54	74.19
PGSC0003DMT400050357	Potato	cytosol	72.1	73.52
KXG40066	Sorghum	plastid	67.4	69.12
HORVU4Hr1G076100.13	Barley	plastid	65.75	68.79
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.47	68.1
TraesCS4B01G292100.1	Wheat	plastid	65.19	67.82
TraesCS4D01G290800.1	Wheat	plastid	64.92	67.72
Solyc08g062190.2.1	Tomato	plastid	69.06	67.39
GSMUA_Achr1P12420_001	Banana	mitochondrion	65.19	65.92
Solyc06g064880.2.1	Tomato	plastid	48.62	57.7
Zm00001d027876_P004	Maize	plastid	63.81	53.1
Zm00001d048292_P003	Maize	plastid	57.18	48.59
Solyc05g054940.2.1	Tomato	plastid	22.1	28.47
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	20.99	25.33
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	20.44	18.05

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0016810
GO:GO:0050152	InterPro:IPR003010	InterPro:IPR036526	UniProt:K4CE01	PFAM:PF00795	PFscan:PS50263
PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317	EnsemblPlantsGene:Solyc07g041280.2	EnsemblPlants:Solyc07g041280.2.1	UniParc:UPI000276B9F9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:52185717..52198017

Molecular Weight (calculated)

40121.1 Da

IEP (calculated)

7.734

GRAVY (calculated)

-0.222

Length

362 amino acids

Sequence
(BLAST)

001: MEAIGITRLC HRNLLPTSNP SLTSTFISSF VIGRTSSHNY NRNFPKFLVS ATMESSFKPE EARVPVELPL PAPPVTKFKI ALCQLSVTTD KERNIVHAQR
101: AIEDAADKGA QLILLPEIWN SPYSNDSFPV YAEDIDAGGD ASPSTRMLSE VSRSRKITII GGSIPERSGD KLYNSCCVFG KDGKLLAKHR KIHLFDIDIP
201: GKMTFKESRT LTAGERPTIV DTEVGRIGIG ICYDIRFQEL AAIYAARGAH LLCYPGAFNM TTGPLHWELL QRARAADCQL YVATCSPARD GGSSYVAWGH
301: STLVGPFGEV LMTTEHEETT LVAEIDYSVI EQRRTYLPFQ KQRRGDLYQL VDVERLTCKG AK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.