Factsheet for Os03t0175600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	82.26	83.06
TraesCS4D01G290800.1	Wheat	plastid	92.26	82.42
TraesCS4B01G292100.1	Wheat	plastid	92.26	82.18
HORVU4Hr1G076100.13	Barley	plastid	91.61	82.08
TraesCS4A01G012200.1	Wheat	golgi, unclear	91.94	81.9
KXG40066	Sorghum	plastid	90.97	79.89
CDX91177	Canola	cytosol, extracellular, nucleus	31.29	78.86
CDX91178	Canola	plastid	36.77	66.28
VIT_04s0008g01690.t01	Wine grape	plastid	77.42	65.93
Bra006138.1-P	Field mustard	plastid	77.1	65.66
CDX78463	Canola	plastid	77.1	65.66
KRH52237	Soybean	nucleus	74.19	65.34
CDX70441	Canola	plastid	76.77	64.85
AT5G12040.1	Thale cress	plastid	77.1	64.77
Solyc08g062190.2.1	Tomato	plastid	77.42	64.69
GSMUA_Achr1P12420_001	Banana	mitochondrion	74.52	64.53
Solyc07g041280.2.1	Tomato	plastid	74.19	63.54
Zm00001d027876_P004	Maize	plastid	84.84	60.46
PGSC0003DMT400050357	Potato	cytosol	67.1	58.59
CDX97163	Canola	plastid	71.61	57.96
KRG89323	Soybean	plastid	42.9	57.58
Zm00001d048292_P003	Maize	plastid	76.45	55.63
Bra008919.1-P	Field mustard	plastid	70.97	51.16
CDX69711	Canola	plastid	70.65	50.93
Os06t0206000-00	Rice	cytosol, mitochondrion, plastid	51.94	49.54
Os12t0502500-01	Rice	plastid	31.29	30.03
Os02t0533900-01	Rice	plasma membrane	25.16	25.91
Os07t0485100-01	Rice	cytoskeleton, cytosol, peroxisome	23.23	17.43

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	ProteinID:ABF94259.1	EMBL:AK059981	ProteinID:BAF11048.1	ProteinID:BAS82572.1
InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	ProteinID:EEE58420.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006107
GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0050152	InterPro:IPR003010
InterPro:IPR036526	EnsemblPlantsGene:Os03g0175600	EnsemblPlants:Os03t0175600-01	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088
PANTHER:PTHR23088:SF30	UniProt:Q10R10	SUPFAM:SSF56317	UniParc:UPI0000DB44DF	SEG:seg	:

Description

CARBAMOYLPUTRESCINE AMIDASE 2Similar to Nit protein 2 (CUA002). (Os03t0175600-01)

Coordinates

chr3:+:4024383..4028509

Molecular Weight (calculated)

33645.0 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.145

Length

310 amino acids

Sequence
(BLAST)

001: MATAASFRPE AARSPPAVQP PAPPLSKFKV ALCQLSVTAD KARNIARARE AIEAAAAGGA KLVLLPEIWN GPYSNDSFPE YAEDIEAGGD AAPSFSMMSE
101: VARSLQITLV GGSISERSGN KLYNTCCVFG SDGELKGKHR KIHLFDIDIP GKITFKESKT LTAGQDLTVV DTDVGRIGIG ICYDIRFQEL AMLYAARGAH
201: LLCYPGAFNM TTGPLHWELL QRARAADNQL FVATCAPARD TSAGYIAWGH STLVGPFGEV IATAEHEETT IMAEIDYSLI DQRRQFLPLQ YQRRGDLYQL
301: VDVQRSGSDE

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.