Factsheet for VIT_04s0008g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	71.15	84.36
CDX91177	Canola	cytosol, extracellular, nucleus	28.3	83.74
Os03t0175600-01	Rice	mitochondrion	65.93	77.42
CDX91178	Canola	plastid	36.26	76.74
KRH52237	Soybean	nucleus	74.18	76.7
Solyc08g062190.2.1	Tomato	plastid	77.75	76.28
Bra006138.1-P	Field mustard	plastid	76.1	76.1
CDX78463	Canola	plastid	76.1	76.1
CDX70441	Canola	plastid	76.1	75.48
AT5G12040.1	Thale cress	plastid	76.37	75.34
KXG40066	Sorghum	plastid	70.33	72.52
HORVU4Hr1G076100.13	Barley	plastid	67.58	71.1
TraesCS4B01G292100.1	Wheat	plastid	67.31	70.4
TraesCS4D01G290800.1	Wheat	plastid	67.03	70.32
TraesCS4A01G012200.1	Wheat	golgi, unclear	67.03	70.11
CDX97163	Canola	plastid	70.6	67.1
GSMUA_Achr1P12420_001	Banana	mitochondrion	65.11	66.2
KRG89323	Soybean	plastid	41.21	64.94
PGSC0003DMT400050357	Potato	cytosol	63.19	64.79
Bra008919.1-P	Field mustard	plastid	68.13	57.67
CDX69711	Canola	plastid	67.86	57.44
Zm00001d027876_P004	Maize	plastid	66.76	55.86
Zm00001d048292_P003	Maize	plastid	60.16	51.41
VIT_13s0067g03530.t01	Wine grape	plastid	23.9	26.77
VIT_06s0080g00560.t01	Wine grape	cytosol	19.23	23.57
VIT_03s0017g00550.t01	Wine grape	cytosol	21.15	18.64

Protein Annotations

EntrezGene:100266241	wikigene:100266241	Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
ProteinID:CCB46600	ProteinID:CCB46600.1	ncoils:Coil	UniProt:F6H3R7	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016740
GO:GO:0016746	GO:GO:0016787	GO:GO:0016810	GO:GO:0050152	InterPro:IPR003010	InterPro:IPR036526
EntrezGene:LOC100266241	wikigene:LOC100266241	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30
SUPFAM:SSF56317	UniParc:UPI0001983158	ArrayExpress:VIT_04s0008g01690	EnsemblPlantsGene:VIT_04s0008g01690	EnsemblPlants:VIT_04s0008g01690.t01	unigene:Vvi.8985
RefSeq:XP_002279687	RefSeq:XP_002279687.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:1307401..1313679

Molecular Weight (calculated)

39456.4 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.061

Length

364 amino acids

Sequence
(BLAST)

001: MKSAALSALL SSTLSYASPP HLNLLRPATA VLCRSLLPTS TPNPFHTQLR TAKISASMSS SFKPEQARVP PAIPPPTPPL SKFKIGLCQL SVTADKERNI
101: AHARKAIEEA VEKGAQLVLL PEIWNSPYSN DSFPVYAEDI DAGSDASPST AMLSEVSHAL KITIVGGSIP ERCGDQLYNT CCVFGSDGKL KAKHRKIHLF
201: DINIPGKITF MESKTLTAGG SPTIVDTEVG RIGIGICYDI RFSELAMLYA ARGAHLICYP GAFNMTTGPL HWELLQRARA ADNQLYVATC SPARDAGAGY
301: VAWGHSTLVG PFGEVLATTE HEEAIIISEI DYSLIELRRT NLPLLNQRRG DLYQLVDVQR LDSQ

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.