Factsheet for VIT_03s0017g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G64370.1	Thale cress	cytosol	82.57	83.58
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	82.57	83.17
PGSC0003DMT400074637	Potato	cytosol	82.32	82.93
Bra024290.1-P	Field mustard	cytosol	81.36	82.35
KRH49832	Soybean	cytosol	81.36	82.35
CDY58268	Canola	nucleus	81.36	82.35
CDX81223	Canola	cytosol	81.11	82.11
Bra037776.1-P	Field mustard	cytosol	81.11	82.11
CDY18713	Canola	cytosol	80.63	81.62
CDX84520	Canola	cytosol	80.15	81.13
EER99388	Sorghum	cytoskeleton, cytosol, peroxisome	79.18	79.18
Zm00001d021506_P001	Maize	extracellular, plasma membrane	79.18	78.99
TraesCS5A01G284600.1	Wheat	golgi	78.45	78.83
TraesCS5D01G292000.1	Wheat	cytosol	78.21	78.59
TraesCS5B01G283800.2	Wheat	cytosol	77.97	78.35
Os07t0485100-01	Rice	cytoskeleton, cytosol, peroxisome	77.48	77.48
GSMUA_Achr5P19870_001	Banana	cytosol	78.93	76.53
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	78.45	76.42
HORVU5Hr1G076080.1	Barley	mitochondrion	78.21	67.29
VIT_06s0080g00560.t01	Wine grape	cytosol	20.1	27.95
VIT_04s0008g01690.t01	Wine grape	plastid	18.64	21.15
VIT_13s0067g03530.t01	Wine grape	plastid	15.5	19.69

Protein Annotations

EntrezGene:100246992	wikigene:100246992	Gene3D:3.60.110.10	MapMan:6.2.4.5	EMBL:AM449079	InterPro:C-N_Hydrolase
InterPro:C-N_Hydrolase_sf	ProteinID:CAN82926	ProteinID:CAN82926.1	ProteinID:CBI34020	ProteinID:CBI34020.3	UniProt:D7TU47
EMBL:FN596248	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010	InterPro:IPR036526	EntrezGene:LOC100246992	wikigene:LOC100246992
PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674	PANTHER:PTHR43674:SF2	SUPFAM:SSF56317	TIGR:TC57186
UniParc:UPI0001985BC9	ArrayExpress:VIT_03s0017g00550	EnsemblPlantsGene:VIT_03s0017g00550	EnsemblPlants:VIT_03s0017g00550.t01	unigene:Vvi.9347	RefSeq:XP_002268313
RefSeq:XP_002268313.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:15191604..15195498

Molecular Weight (calculated)

46231.8 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.332

Length

413 amino acids

Sequence
(BLAST)

001: MERREEENGK LEETQPSTDG SICGFQSLHH LLKASLQPHL YQEVSRLLLG LNCGKPLENI ALPESAKALS LEHGFDLQAY CFHADKEQLR ESRIVRVGLI
101: QNSIASPTTA PFLDQRGAIF EKLKPIIDAA GASGVHILCL QEAWTMPFAF CTREKRWSEF AEPVDGESTQ FLQDLAQKYN MVIVSPILER DVKHGETIWN
201: TAVIIGNNGN IIGKHRKNHI PRVGDFNEST YYMEGNTGHP VFETAFGKIA INICYGRHHP LNWLAFGLNG AEIVFNPSAT VGELSEPMWP IEARNAAIAN
301: SYFVASINRV GTEIFPNPFT SGDGKPQHAD FGHFYGSSHF SAPDASCTPS LSRYQDGLLI SDMDLNLCRQ LKDKWGFRMT SRYEMYAELL ARYIKPDFEP
401: QVVSDPSLHK KSS

Best Arabidopsis Sequence Match ( AT5G64370.1 )
(BLAST)

001: MDHMISENGE TSAEGSICGY DSLHQLLSAN LKPELYQEVN RLLLGRNCGR SLEQIVLPES AKALSSKHDF DLQAASFSAD KEQMRNPRVV RVGLIQNSIA
101: LPTTAPFSDQ TRGIFDKLKP IIDAAGVAGV NILCLQEAWT MPFAFCTRER RWCEFAEPVD GESTKFLQEL AKKYNMVIVS PILERDIDHG EVLWNTAVII
201: GNNGNIIGKH RKNHIPRVGD FNESTYYMEG DTGHPVFETV FGKIAVNICY GRHHPLNWLA FGLNGAEIVF NPSATVGELS EPMWPIEARN AAIANSYFVG
301: SINRVGTEVF PNPFTSGDGK PQHNDFGHFY GSSHFSAPDA SCTPSLSRYK DGLLISDMDL NLCRQYKDKW GFRMTARYEV YADLLAKYIK PDFKPQVVSD
401: PLLHKNST

Arabidopsis Description

PYD3Beta-ureidopropionase [Source:UniProtKB/Swiss-Prot;Acc:Q8H183]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.