Factsheet for VIT_13s0067g03530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060185	Potato	plastid	73.54	85.05
Solyc05g054940.2.1	Tomato	plastid	72.92	84.34
KRG93006	Soybean	cytosol	65.23	73.87
GSMUA_Achr2P19050_001	Banana	cytosol	62.77	72.08
KRH36253	Soybean	nucleus	70.46	71.56
CDY70138	Canola	plastid	64.0	69.8
TraesCS5A01G108700.1	Wheat	plastid	66.15	69.13
AT4G08790.1	Thale cress	plastid	65.23	69.06
CDX75139	Canola	plastid	63.08	68.79
TraesCS5D01G121200.1	Wheat	plastid	63.69	68.54
Os12t0502500-01	Rice	plastid	67.38	67.8
Zm00001d023729_P005	Maize	plastid	64.92	65.33
Bra037878.1-P	Field mustard	plastid	64.0	63.8
EES16018	Sorghum	plastid	63.69	62.92
TraesCS5B01G114100.1	Wheat	plastid, unclear	65.23	62.35
VIT_04s0008g01690.t01	Wine grape	plastid	26.77	23.9
VIT_06s0080g00560.t01	Wine grape	cytosol	21.54	23.57
VIT_03s0017g00550.t01	Wine grape	cytosol	19.69	15.5

Protein Annotations

MapMan:10.3.3.2.3	EntrezGene:100251802	wikigene:100251802	Gene3D:3.60.110.10	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
ProteinID:CCB49762	ProteinID:CCB49762.1	UniProt:F6HC24	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0016787	GO:GO:0016810	GO:GO:0046686	InterPro:IPR003010
InterPro:IPR036526	EntrezGene:LOC100251802	wikigene:LOC100251802	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088
PANTHER:PTHR23088:SF27	SUPFAM:SSF56317	TIGR:TC52991	TIGR:TC57256	UniParc:UPI0001984759	ArrayExpress:VIT_13s0067g03530
EnsemblPlantsGene:VIT_13s0067g03530	EnsemblPlants:VIT_13s0067g03530.t01	unigene:Vvi.7155	RefSeq:XP_002275667	RefSeq:XP_002275667.2	RefSeq:XP_002275667.3

Description

No Description!

Coordinates

chr13:+:1966118..1976942

Molecular Weight (calculated)

35860.9 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.124

Length

325 amino acids

Sequence
(BLAST)

001: MSFCLHSAPN NSRISWIQNR RRLALKNSRF ASEAIRAITG NSTMANSVRV AAVQMTSVND LAANFATCSR LVKEAVSAGA KFICFPENFS FVATKDGESL
101: TIAEPLDGPI MQGYRSLARE SKIWLSLGGF QEKGQDDAHL CNTHVLIDDT GNIRSKYRKI HLFDVDVPGG AVYKESSFTE GGKEVVAVDS PIGRLGVTVC
201: YDLRFPELYQ QLRFLHDAQV LLVPAAFTKV TGQAHWELLL RARAIETQCY VIAAAQAGKH NDKRESYGDS LIIDPWGTII GRLPDRLSTG IAVADIDFSL
301: IDSVRAKMPI SQHRKPPEFW KSASL

Best Arabidopsis Sequence Match ( AT4G08790.1 )
(BLAST)

001: MNAYSVSLDF TKPSLFTRIT LSSQIPLTMA TTVNKTVRVA AAQMTSVNDL MTNFATCSRL VQEAALAGAK LICFPENFSF VGDKEGESVK IAEPLDGPVM
101: ERYCSLARDS NIWLSLGGFQ ERFDDTHLCN THVVIDDAGM IRDTYQKMHL FDVDVPGGSS YKESSFTVPG TKIVSVDSPV GRLGLTVCYD LRFPKIYQQL
201: RFEQKAQVLL VPSAFTKVTG EAHWEILLRA RAIETQCYVI AAAQAGKHNE KRESYGDTLI IDPWGTVVGR LPDRVSTGIV VADIDFSLID SVRTKMPIDK
301: QRVSIDL

Arabidopsis Description

NLP2Nitrilase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.