Factsheet for VIT_06s0080g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26651	Soybean	cytosol	87.54	86.96
GSMUA_Achr6P19390_001	Banana	cytosol	81.14	86.38
KRH42198	Soybean	cytosol	86.87	86.29
PGSC0003DMT400067716	Potato	cytosol	86.87	86.0
CDX77117	Canola	cytosol	86.53	85.95
KRH22668	Soybean	cytosol	86.53	85.95
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	86.53	85.67
Bra034353.1-P	Field mustard	cytosol	85.52	85.52
CDY30547	Canola	cytosol	85.52	85.52
TraesCS5D01G031200.1	Wheat	golgi	80.47	79.4
TraesCS5A01G024500.1	Wheat	cytosol	80.13	79.33
EES05187	Sorghum	cytosol	79.46	79.19
AT2G27450.2	Thale cress	cytosol	86.87	79.14
HORVU5Hr1G006730.1	Barley	cytosol, mitochondrion	80.13	79.07
Os02t0533900-01	Rice	plasma membrane	79.8	78.74
TraesCS5B01G022300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.8	78.74
Zm00001d016704_P001	Maize	extracellular	78.45	77.67
Bra012018.1-P	Field mustard	cytosol	18.18	69.23
CDX71452	Canola	plastid	32.66	43.89
VIT_13s0067g03530.t01	Wine grape	plastid	23.57	21.54
VIT_03s0017g00550.t01	Wine grape	cytosol	27.95	20.1
VIT_04s0008g01690.t01	Wine grape	plastid	23.57	19.23

Protein Annotations

KEGG:00330+3.5.1.53	EntrezGene:100260445	wikigene:100260445	Gene3D:3.60.110.10	MapMan:8.1.1.3	InterPro:C-N_Hydrolase
InterPro:C-N_Hydrolase_sf	ProteinID:CBI28309	ProteinID:CBI28309.3	UniProt:D7TCT6	EMBL:FN595757	GO:GO:0003674
GO:GO:0003824	GO:GO:0006596	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0016810	GO:GO:0050126	InterPro:IPR003010	InterPro:IPR036526
EntrezGene:LOC100260445	wikigene:LOC100260445	InterPro:N-carbamoylputrescine_amidase	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674
PANTHER:PTHR43674:SF3	SUPFAM:SSF56317	TIGR:TC57504	TIGRFAMs:TIGR03381	UniParc:UPI0001BE3416	ArrayExpress:VIT_06s0080g00560
EnsemblPlantsGene:VIT_06s0080g00560	EnsemblPlants:VIT_06s0080g00560.t01	unigene:Vvi.6662	RefSeq:XP_002274913	RefSeq:XP_002274913.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:20561725..20568730

Molecular Weight (calculated)

33212.5 Da

IEP (calculated)

5.922

GRAVY (calculated)

-0.264

Length

297 amino acids

Sequence
(BLAST)

001: MEGNRVVVVS ALQFACTDDV PTNLNTAERL VRDAHRKGAN IILIQELFEG YYFCQAQRED FFQRAKPYKG HPTILRMQKL AKELGVVIPV SFFEEANNAH
101: YNSIAIVDAD GTDLGIYRKS HIPDGPGYQE KFYFNPGDTG FKVFETKFAK IGVAICWDQW FPEAARAMVL QGAEILLYPT AIGSEPQDTG LDSCDHWKRV
201: MQGHAGANLV PLVASNRIGK EIIQTEHGNT EITFYGNSFI AGPTGEIVAA ADDKEEAVVV AQFDLDKIKS KRYSWGIFRD RRPDLYKVLL TLDGSKP

Best Arabidopsis Sequence Match ( AT2G27450.1 )
(BLAST)

001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL

Arabidopsis Description

CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.