Factsheet for TraesCS5D01G031200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G024500.1	Wheat	cytosol	99.34	99.67
TraesCS5B01G022300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.34	99.34
HORVU5Hr1G006730.1	Barley	cytosol, mitochondrion	99.34	99.34
EES05187	Sorghum	cytosol	91.03	91.95
Os02t0533900-01	Rice	plasma membrane	90.03	90.03
Zm00001d016704_P001	Maize	extracellular	89.37	89.67
GSMUA_Achr6P19390_001	Banana	cytosol	78.74	84.95
PGSC0003DMT400067716	Potato	cytosol	80.4	80.67
VIT_06s0080g00560.t01	Wine grape	cytosol	79.4	80.47
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	80.07	80.33
KRH42198	Soybean	cytosol	79.73	80.27
KRH26651	Soybean	cytosol	79.73	80.27
KRH22668	Soybean	cytosol	79.07	79.6
CDY30547	Canola	cytosol	78.41	79.46
Bra034353.1-P	Field mustard	cytosol	78.41	79.46
CDX77117	Canola	cytosol	78.41	78.93
AT2G27450.2	Thale cress	cytosol	79.4	73.31
Bra012018.1-P	Field mustard	cytosol	16.61	64.1
CDX71452	Canola	plastid	28.9	39.37
TraesCS4D01G290800.1	Wheat	plastid	26.58	23.05
TraesCS7D01G167300.1	Wheat	plastid	21.93	22.76
TraesCS5D01G121200.1	Wheat	plastid	21.26	21.19
TraesCS5D01G292000.1	Wheat	cytosol	28.57	20.92

Protein Annotations

KEGG:00330+3.5.1.53	Gene3D:3.60.110.10	MapMan:8.1.1.3	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0006596	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0050126	InterPro:IPR003010	InterPro:IPR036526	InterPro:N-carbamoylputrescine_amidase
PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674	PANTHER:PTHR43674:SF3	SUPFAM:SSF56317	TIGRFAMs:TIGR03381
EnsemblPlantsGene:TraesCS5D01G031200	EnsemblPlants:TraesCS5D01G031200.1	TIGR:cd07573	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:28452000..28455703

Molecular Weight (calculated)

33463.8 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.313

Length

301 amino acids

Sequence
(BLAST)

001: MAGAGRKVAV AAVQFACTDT VADNVAAAER LIREAHKKGA NIILIQELFE GHYFCQAQRM DFFGRAKPYK ENPTIMRMQK LAKELDVVIP VSFFEEAGNA
101: HYNSVAIIDA DGTDLGLYRK SHIPDGPGYQ EKFYFNPGDT GFKAFKTKYA TIGVGICWDQ WFPETARAMV LQGAEILFYP TAIGSEPQDM NLDSREHWKR
201: VMQGHAGANL VPLVASNRIG KETVETEHGN STIKFYGNSF IAGPTGEIVK LANDKDEEVL VAEFDLDEIK STRHGWGIFR DRRPDLYKVL LTLDGKTSSS
301: S

Best Arabidopsis Sequence Match ( AT2G27450.1 )
(BLAST)

001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL

Arabidopsis Description

CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.