Factsheet for TraesCS5B01G022300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G024500.1	Wheat	cytosol	99.34	99.67
TraesCS5D01G031200.1	Wheat	golgi	99.34	99.34
HORVU5Hr1G006730.1	Barley	cytosol, mitochondrion	99.34	99.34
EES05187	Sorghum	cytosol	91.03	91.95
Os02t0533900-01	Rice	plasma membrane	90.03	90.03
Zm00001d016704_P001	Maize	extracellular	89.37	89.67
GSMUA_Achr6P19390_001	Banana	cytosol	78.74	84.95
PGSC0003DMT400067716	Potato	cytosol	79.73	80.0
VIT_06s0080g00560.t01	Wine grape	cytosol	78.74	79.8
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	79.4	79.67
KRH26651	Soybean	cytosol	79.07	79.6
KRH42198	Soybean	cytosol	79.07	79.6
CDY30547	Canola	cytosol	78.41	79.46
Bra034353.1-P	Field mustard	cytosol	78.41	79.46
CDX77117	Canola	cytosol	78.41	78.93
KRH22668	Soybean	cytosol	78.41	78.93
AT2G27450.2	Thale cress	cytosol	78.74	72.7
Bra012018.1-P	Field mustard	cytosol	16.61	64.1
CDX71452	Canola	plastid	28.9	39.37
TraesCS7B01G071300.1	Wheat	cytosol, extracellular, mitochondrion, plastid	22.59	23.69
TraesCS4B01G292100.1	Wheat	plastid	27.24	23.56
TraesCS7B01G071000.1	Wheat	cytosol, extracellular, mitochondrion, plastid	21.93	22.92
TraesCS5B01G283800.2	Wheat	cytosol	28.24	20.68
TraesCS5B01G114100.1	Wheat	plastid, unclear	21.26	18.82

Protein Annotations

KEGG:00330+3.5.1.53	Gene3D:3.60.110.10	MapMan:8.1.1.3	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0006596	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0050126	InterPro:IPR003010	InterPro:IPR036526	InterPro:N-carbamoylputrescine_amidase
PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674	PANTHER:PTHR43674:SF3	SUPFAM:SSF56317	TIGRFAMs:TIGR03381
EnsemblPlantsGene:TraesCS5B01G022300	EnsemblPlants:TraesCS5B01G022300.1	TIGR:cd07573	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:20829916..20833224

Molecular Weight (calculated)

33320.6 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.302

Length

301 amino acids

Sequence
(BLAST)

001: MAGAGRKVAV AAVQFACTDT VADNVAAAXR LIREAHKKGA NIVLIQELFE GHYFCQAQRM DFFGRAKPYK ENPTIMRMQK LAKELDVVIP VSFFEEAGNA
101: HYNSVAIIDA DGTDLGLYRK SHIPDGPGYQ EKFYFNPGDT GFKAFKTKYA TIGVGICWDQ WFPETARAMV LQGAEILFYP TAIGSEPQDM NLDSREHWKR
201: VMQGHAGANL VPLVASNRIG KETVETEHGN STIKFYGNSF IAGPTGEIVK LANDKDEEVL VAEFDLDEIK STRHGWGIFR DRRPDLYKVL LTLDGKTSSS
301: S

Best Arabidopsis Sequence Match ( AT2G27450.1 )
(BLAST)

001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL

Arabidopsis Description

CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.