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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • cytosol 4
  • plasma membrane 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400067716 Potato cytosol 99.33 99.33
VIT_06s0080g00560.t01 Wine grape cytosol 85.67 86.53
KRH22668 Soybean cytosol 85.67 85.95
KRH42198 Soybean cytosol 85.33 85.62
KRH26651 Soybean cytosol 84.67 84.95
GSMUA_Achr6P19390_001 Banana cytosol 79.0 84.95
CDX77117 Canola cytosol 84.33 84.62
Bra034353.1-P Field mustard cytosol 83.67 84.51
CDY30547 Canola cytosol 83.67 84.51
EES05187 Sorghum cytosol 80.0 80.54
TraesCS5D01G031200.1 Wheat golgi 80.33 80.07
TraesCS5A01G024500.1 Wheat cytosol 80.0 80.0
HORVU5Hr1G006730.1 Barley cytosol, mitochondrion 80.0 79.73
TraesCS5B01G022300.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 79.67 79.4
Os02t0533900-01 Rice plasma membrane 79.0 78.74
Zm00001d016704_P001 Maize extracellular 78.67 78.67
AT2G27450.2 Thale cress cytosol 84.67 77.91
Bra012018.1-P Field mustard cytosol 17.67 67.95
CDX71452 Canola plastid 31.67 42.99
Solyc06g064880.2.1 Tomato plastid 24.33 23.93
Solyc05g054940.2.1 Tomato plastid 22.0 23.49
Solyc10g047630.1.1 Tomato endoplasmic reticulum, extracellular, plastid 29.33 21.46
Solyc07g041280.2.1 Tomato plastid 25.33 20.99
Solyc08g062190.2.1 Tomato plastid 25.33 20.49
Protein Annotations
KEGG:00330+3.5.1.53Gene3D:3.60.110.10MapMan:8.1.1.3InterPro:C-N_HydrolaseInterPro:C-N_Hydrolase_sfGO:GO:0003674
GO:GO:0003824GO:GO:0006596GO:GO:0006807GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016787GO:GO:0016810GO:GO:0033388GO:GO:0050126InterPro:IPR003010
InterPro:IPR036526InterPro:N-carbamoylputrescine_amidasePFAM:PF00795PFscan:PS50263PANTHER:PTHR43674PANTHER:PTHR43674:SF3
UniProt:Q9XGI9SUPFAM:SSF56317EnsemblPlantsGene:Solyc11g068540.1EnsemblPlants:Solyc11g068540.1.1TIGRFAMs:TIGR03381UniParc:UPI00000A5905
EMBL:Y19104:::::
Description
CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q9XGI9]
Coordinates
chr11:-:53230361..53236610
Molecular Weight (calculated)
33406.5 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.299
Length
300 amino acids
Sequence
(BLAST)
001: MAEKNRLVTV AALQFACTDD VSTNVATAER LVRAAHQKGA NIILIQELFE GYYFCQAQKE EFFHRAKPYP GHPTIVRMQN LAKELGVVIP VSFFEEANNA
101: HYNSVAIIDA DGTDLGLYRK SHIPDGPGYQ EKYYFNPGDT GFKVFQTKYA KIGVAICWDQ WFPEAARAMA LQGAEVLFYP TAIGSEPQDD GLDSRDHWRR
201: VMQGHAGANV VPLVASNRIG KEIIETEHGN SEITFYGYSF IAGPTGELVA AAGDKEEAVL VAQFDLDKIK SKRHGWGVYR DRRPDLYKVL LTLDGSNPVK
Best Arabidopsis Sequence Match ( AT2G27450.1 )
(BLAST)
001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL
Arabidopsis Description
CPAN-carbamoylputrescine amidase [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.