Factsheet for Solyc08g062190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	68.73	83.06
CDX91177	Canola	cytosol, extracellular, nucleus	26.15	78.86
VIT_04s0008g01690.t01	Wine grape	plastid	76.28	77.75
Os03t0175600-01	Rice	mitochondrion	64.69	77.42
CDX91178	Canola	plastid	35.04	75.58
Bra006138.1-P	Field mustard	plastid	72.78	74.18
CDX78463	Canola	plastid	72.78	74.18
CDX70441	Canola	plastid	72.78	73.57
AT5G12040.1	Thale cress	plastid	72.24	72.63
KRH52237	Soybean	nucleus	68.73	72.44
HORVU4Hr1G076100.13	Barley	plastid	66.31	71.1
KXG40066	Sorghum	plastid	67.39	70.82
TraesCS4B01G292100.1	Wheat	plastid	66.31	70.69
TraesCS4A01G012200.1	Wheat	golgi, unclear	66.04	70.4
TraesCS4D01G290800.1	Wheat	plastid	65.77	70.32
Solyc07g041280.2.1	Tomato	plastid	67.39	69.06
CDX97163	Canola	plastid	67.66	65.54
GSMUA_Achr1P12420_001	Banana	mitochondrion	63.07	65.36
KRG89323	Soybean	plastid	39.08	62.77
Solyc06g064880.2.1	Tomato	plastid	47.71	58.03
Bra008919.1-P	Field mustard	plastid	66.31	57.21
CDX69711	Canola	plastid	66.04	56.98
Zm00001d027876_P004	Maize	plastid	64.69	55.17
Zm00001d048292_P003	Maize	plastid	58.49	50.94
Solyc05g054940.2.1	Tomato	plastid	22.1	29.18
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	20.49	25.33
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	20.49	18.54

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016740
GO:GO:0016746	GO:GO:0016787	GO:GO:0016810	GO:GO:0050152	InterPro:IPR003010	InterPro:IPR036526
UniProt:K4CL08	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317
EnsemblPlantsGene:Solyc08g062190.2	EnsemblPlants:Solyc08g062190.2.1	UniParc:UPI000276B0B2	SEG:seg	:	:

Description

Omega-amidase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G12040) UniProtKB/Swiss-Prot;Acc:Q8RUF8]

Coordinates

chr8:-:50666299..50680269

Molecular Weight (calculated)

40547.4 Da

IEP (calculated)

6.902

GRAVY (calculated)

-0.137

Length

371 amino acids

Sequence
(BLAST)

001: MRLGFLFLSS SSPVVGSSIS RSIARPAPSL LLHHPFHFIP NRTTTNSNPF QFSPRSTLTA SASSMASTFK PEQARVPPAL QLPSPPITKF KIGLCQLSVT
101: ADKERNIAHA RAAIEEAAEK GAKLVVLPEI WNSPYSNDSF PIYAEDIDAG PDASPSTAML SEAARLLKIT IVGGSIPEHS GDKLYNTCCV FDADGKLKAK
201: HRKIHLFDID IPGKITFKES QTLTAGETPT VVDTEVGRIG IGICYDIRFQ ELAMLYAARG AHLICYPGAF NMTTGPLHWE LLQRARAVDN QLYVATCAPA
301: RDVDGGYVAW GHSTLIGPFG EVLATTEHDE AIIISEIDYS QIELRRTNLP LEKQRRGDLY QLVDVQRSSS Q

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.