CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91178	Canola	plastid	49.35	66.28
KRH52237	Soybean	nucleus	78.79	51.7
GSMUA_Achr1P21960_001	Banana	cytosol	60.61	45.6
Os03t0175600-01	Rice	mitochondrion	57.58	42.9
VIT_04s0008g01690.t01	Wine grape	plastid	64.94	41.21
AT5G12040.1	Thale cress	plastid	63.2	39.57
Bra006138.1-P	Field mustard	plastid	62.34	39.56
CDX78463	Canola	plastid	62.34	39.56
CDX70441	Canola	plastid	62.77	39.51
PGSC0003DMT400050357	Potato	cytosol	60.17	39.15
Solyc08g062190.2.1	Tomato	plastid	62.77	39.08
KXG40066	Sorghum	plastid	58.44	38.24
HORVU4Hr1G076100.13	Barley	plastid	56.71	37.86
TraesCS4D01G290800.1	Wheat	plastid	56.71	37.75
TraesCS4B01G292100.1	Wheat	plastid	56.71	37.64
TraesCS4A01G012200.1	Wheat	golgi, unclear	56.71	37.64
GSMUA_Achr1P12420_001	Banana	mitochondrion	56.28	36.31
CDX97163	Canola	plastid	58.01	34.99
Zm00001d027876_P004	Maize	plastid	58.01	30.8
Zm00001d048292_P003	Maize	plastid	56.71	30.75
Bra008919.1-P	Field mustard	plastid	56.71	30.47
CDX69711	Canola	plastid	56.28	30.23
CDX91177	Canola	cytosol, extracellular, nucleus	12.55	23.58
KRH36253	Soybean	nucleus	21.64	15.62
KRH26651	Soybean	cytosol	19.91	15.38
KRG93006	Soybean	cytosol	19.05	15.33
KRH42198	Soybean	cytosol	19.05	14.72
KRH22668	Soybean	cytosol	18.61	14.38
KRH49832	Soybean	cytosol	22.51	12.75

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	UniProt:A0A0R0E5N3	EMBL:ACUP02012198	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
EnsemblPlantsGene:GLYMA_20G016600	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010	InterPro:IPR036526	EnsemblPlants:KRG89323	ProteinID:KRG89323
ProteinID:KRG89323.1	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317
UniParc:UPI0006EDC08C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:1519524..1521035

Molecular Weight (calculated)

25095.1 Da

IEP (calculated)

4.502

GRAVY (calculated)

0.192

Length

231 amino acids

Sequence
(BLAST)

001: MSATSVNSER ALAPPAIPLP PPPLSNFKIG LYQLSVSPDK DNNIAHARTA IQDDASKGAQ LVLLPVSPFS FFLGSHLREG LLTCFVLSCQ EIWNSPYSND
101: SFSVYAEDID AGASPSTAML SELSRILKIT IVGCFILESY GGLLYNTCCV FGTDENLLAK DRKIHLFDID IPGKITFIES KTLTVGETLT IVDTEVGRIS
201: IGICYDIRFP ELAMIYVARG FSDSSNMLGN N

Best Arabidopsis Sequence Match ( AT5G12040.2 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQV HEPS

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.