CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89323	Soybean	plastid	66.28	49.35
GSMUA_Achr1P21960_001	Banana	cytosol	72.67	40.72
CDX78463	Canola	plastid	84.88	40.11
CDX70441	Canola	plastid	85.47	40.05
AT5G12040.1	Thale cress	plastid	84.3	39.3
KRH52237	Soybean	nucleus	75.58	36.93
Os03t0175600-01	Rice	mitochondrion	66.28	36.77
VIT_04s0008g01690.t01	Wine grape	plastid	76.74	36.26
Solyc08g062190.2.1	Tomato	plastid	75.58	35.04
KXG40066	Sorghum	plastid	69.77	33.99
CDX97163	Canola	plastid	75.58	33.94
PGSC0003DMT400050357	Potato	cytosol	69.19	33.52
TraesCS4D01G290800.1	Wheat	plastid	65.7	32.56
TraesCS4B01G292100.1	Wheat	plastid	65.7	32.47
GSMUA_Achr1P12420_001	Banana	mitochondrion	67.44	32.4
HORVU4Hr1G076100.13	Barley	plastid	65.12	32.37
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.12	32.18
CDX69711	Canola	plastid	75.58	30.23
Zm00001d027876_P004	Maize	plastid	69.77	27.59
Zm00001d048292_P003	Maize	plastid	68.02	27.46
CDY70138	Canola	plastid	22.67	13.09
CDX75139	Canola	plastid	22.67	13.09
CDX84520	Canola	cytosol	27.91	11.76
CDY18713	Canola	cytosol	27.33	11.52
CDX81223	Canola	cytosol	27.33	11.52
CDY30547	Canola	cytosol	19.77	11.45
CDX77117	Canola	cytosol	19.77	11.37
CDY58268	Canola	nucleus	26.74	11.27
CDX71452	Canola	plastid	7.56	5.88
CDX91177	Canola	cytosol, extracellular, nucleus	2.91	4.07

Protein Annotations

EnsemblPlants:CDX91178	EnsemblPlantsGene:GSBRNA2T00151981001	Gene3D:3.60.110.10	GO:A0A078DVE7	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088
PANTHER:PTHR23088:SF30	PFAM:PF00795	PFscan:PS50263	ProteinID:CDX91178	ProteinID:CDX91178.1	SEG:seg
SUPFAM:SSF56317	UniParc:UPI0004EE1010	MapMan:4.1.2.1.4	:	:	:

Description

BnaC02g04190D

Coordinates

chrLK031865:-:1238701..1239665

Molecular Weight (calculated)

18485.3 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.055

Length

172 amino acids

Sequence
(BLAST)

001: MKSAVSSKLE PPLLSPSHLL PPPLTKFNIG LCQLSVKTRN ISHAKNAIEE AASKGAKLVL LPEIWNSPYA NDSFPVYAED IDAGGDASPS TAMLSEASKR
101: LGVTIVGGSI PERVGDRLYN TCCVFGSDGE LTAKHRKIHL FDIDIPGKIT FIESKTLTAG ETPTILRPLQ LF

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.