CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006138.1-P	Field mustard	plastid	99.73	99.73
CDX70441	Canola	plastid	98.35	97.55
AT5G12040.1	Thale cress	plastid	95.05	93.77
CDX91177	Canola	cytosol, extracellular, nucleus	31.59	93.5
CDX91178	Canola	plastid	40.11	84.88
GSMUA_Achr1P21960_001	Banana	cytosol	69.78	82.74
Os03t0175600-01	Rice	mitochondrion	65.66	77.1
VIT_04s0008g01690.t01	Wine grape	plastid	76.1	76.1
KRH52237	Soybean	nucleus	72.8	75.28
CDX97163	Canola	plastid	78.3	74.41
Solyc08g062190.2.1	Tomato	plastid	74.18	72.78
KXG40066	Sorghum	plastid	68.96	71.1
HORVU4Hr1G076100.13	Barley	plastid	66.76	70.23
TraesCS4B01G292100.1	Wheat	plastid	66.21	69.25
TraesCS4D01G290800.1	Wheat	plastid	65.93	69.16
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.93	68.97
GSMUA_Achr1P12420_001	Banana	mitochondrion	66.48	67.6
CDX69711	Canola	plastid	75.55	63.95
PGSC0003DMT400050357	Potato	cytosol	62.36	63.94
KRG89323	Soybean	plastid	39.56	62.34
Zm00001d027876_P004	Maize	plastid	65.66	54.94
Zm00001d048292_P003	Maize	plastid	59.62	50.94
CDY70138	Canola	plastid	23.63	28.86
CDX75139	Canola	plastid	23.35	28.52
CDY30547	Canola	cytosol	20.88	25.59
CDX77117	Canola	cytosol	20.88	25.42
CDY18713	Canola	cytosol	21.43	19.12
CDX81223	Canola	cytosol	21.15	18.87
CDX84520	Canola	cytosol	20.88	18.63
CDY58268	Canola	nucleus	20.33	18.14
CDX71452	Canola	plastid	7.97	13.12

Protein Annotations

EnsemblPlants:CDX78463	EnsemblPlantsGene:GSBRNA2T00129852001	Gene3D:3.60.110.10	GO:A0A078CTH6	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088
PANTHER:PTHR23088:SF30	PFAM:PF00795	PFscan:PS50263	ProteinID:CDX78463	ProteinID:CDX78463.1	SEG:seg
SUPFAM:SSF56317	UniParc:UPI0004EE7B99	MapMan:4.1.2.1.4	:	:	:

Description

BnaA03g03750D

Coordinates

chrLK031815:+:872012..874454

Molecular Weight (calculated)

39670.6 Da

IEP (calculated)

8.354

GRAVY (calculated)

-0.150

Length

364 amino acids

Sequence
(BLAST)

001: MKSAVSSSLF FHSKNLLKPN PLSRLESVFL PKPSLRSIVK LPSSSTTSGL RSISSSSMAS SFKPEQARVP SALPLPAPPL TKFNIGLCQL SVTADKSRNI
101: SHAKKAIEEA ASKGAKLVLL PEIWNSPYSN DSFPVYAEEI DAGGDASPST AMLSEVSKRL EITIIGGSIP ERVGDRLYNT CCVFGSDGEL KAKHRKIHLF
201: DIDIPGKITF MESKTLTAGE TPTIVDTDVG RIGIGICYDI RFQELAMIYA ARGAHLLCYP GAFNMTTGPL HWELLQRARA TDNQLYVATC SPARDSGAGY
301: TAWGHSTLIG PFGEVLATTE HEEAIIIAEI DYSILEQRRT SLPLNKQRRG DLYQLVDVQR LNSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.