Factsheet for Zm00001d027876_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40066	Sorghum	plastid	72.41	89.24
Os03t0175600-01	Rice	mitochondrion	60.46	84.84
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.75	82.18
TraesCS4B01G292100.1	Wheat	plastid	65.52	81.9
TraesCS4D01G290800.1	Wheat	plastid	65.29	81.84
HORVU4Hr1G076100.13	Barley	plastid	65.06	81.79
GSMUA_Achr1P21960_001	Banana	cytosol	57.24	81.11
CDX91177	Canola	cytosol, extracellular, nucleus	21.15	74.8
CDX91178	Canola	plastid	27.59	69.77
KRH52237	Soybean	nucleus	54.25	67.05
VIT_04s0008g01690.t01	Wine grape	plastid	55.86	66.76
Bra006138.1-P	Field mustard	plastid	54.94	65.66
CDX78463	Canola	plastid	54.94	65.66
GSMUA_Achr1P12420_001	Banana	mitochondrion	54.02	65.64
AT5G12040.1	Thale cress	plastid	55.17	65.04
CDX70441	Canola	plastid	54.71	64.85
Solyc08g062190.2.1	Tomato	plastid	55.17	64.69
Solyc07g041280.2.1	Tomato	plastid	53.1	63.81
Zm00001d048292_P003	Maize	plastid	60.0	61.27
CDX97163	Canola	plastid	53.56	60.84
PGSC0003DMT400050357	Potato	cytosol	49.2	60.28
KRG89323	Soybean	plastid	30.8	58.01
Bra008919.1-P	Field mustard	plastid	53.1	53.72
CDX69711	Canola	plastid	52.87	53.49
Zm00001d023729_P005	Maize	plastid	21.15	28.48
Zm00001d016704_P001	Maize	extracellular	17.93	26.0
Zm00001d021506_P001	Maize	extracellular, plasma membrane	17.93	18.84

Protein Annotations

EntrezGene:100280276	Gene3D:3.60.110.10	MapMan:4.1.2.1.4	UniProt:A0A1D6JQB2	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016810	InterPro:IPR003010	InterPro:IPR036526	ProteinID:ONL94180.1	PFAM:PF00795	PFscan:PS50263
PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317	UniParc:UPI000842D88F	EnsemblPlantsGene:Zm00001d027876	EnsemblPlants:Zm00001d027876_P004
EnsemblPlants:Zm00001d027876_T004	SEG:seg	:	:	:	:

Description

Omega-amidase chloroplastic

Coordinates

chr1:+:16227533..16235054

Molecular Weight (calculated)

47009.3 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.171

Length

435 amino acids

Sequence
(BLAST)

001: MRAAAAATST AAALLAPGLK LCAGGARARV SCPSRSRLPL HRIAAMASAP NPSFRPEEAR SPPALELPTP PLSKFKVALC QLSVTADKNR NIAHARAAIE
101: KAASEGAKLV LLPEIWNGPY SNDSFPEYAE DIEAGGDAAP SFSMMSEVAR ILQVTLVGGS IAERSGNNLY NTCCIFGSDG KLKGKHRKIH LFDIDIPGKI
201: TFKESKTLTA GQNPTVVDTD VGRIGIGICY DIRFQELAML YAARGAHLLC YPGAFNMTTG PLHWELLQRA RATDNQLFVA TCGPARDTSA GYVAWGHSTL
301: VGPFGEVIAT TEHEEATIIA EIDYSLIEQR SCLLQHALRV EIPYQCRVGQ QTCELREAGK HNEGVSSRRN PGGAAESGPR HCSTATAAQE LPLLTGTAHC
401: YRRWLCLTLS VRQARHGELM SQQLKKPPAF WWPEL

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.