Factsheet for Bra008919.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69711	Canola	plastid	99.77	99.77
AT5G12040.1	Thale cress	plastid	65.35	76.15
Bra006138.1-P	Field mustard	plastid	64.19	75.82
GSMUA_Achr1P21960_001	Banana	cytosol	53.26	74.59
Os03t0175600-01	Rice	mitochondrion	51.16	70.97
KRH52237	Soybean	nucleus	57.67	70.45
VIT_04s0008g01690.t01	Wine grape	plastid	57.67	68.13
KXG40066	Sorghum	plastid	54.65	66.57
Solyc08g062190.2.1	Tomato	plastid	57.21	66.31
HORVU4Hr1G076100.13	Barley	plastid	53.26	66.19
TraesCS4A01G012200.1	Wheat	golgi, unclear	52.79	65.23
TraesCS4B01G292100.1	Wheat	plastid	52.56	64.94
TraesCS4D01G290800.1	Wheat	plastid	52.09	64.55
GSMUA_Achr1P12420_001	Banana	mitochondrion	51.63	62.01
PGSC0003DMT400050357	Potato	cytosol	50.23	60.85
KRG89323	Soybean	plastid	30.47	56.71
Zm00001d027876_P004	Maize	plastid	53.72	53.1
Zm00001d048292_P003	Maize	plastid	46.98	47.42
Bra034353.1-P	Field mustard	cytosol	17.67	25.59
Bra037878.1-P	Field mustard	plastid	19.3	25.46
Bra037776.1-P	Field mustard	cytosol	19.3	20.34
Bra024290.1-P	Field mustard	cytosol	18.37	19.36
Bra012018.1-P	Field mustard	cytosol	3.02	16.67

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	EnsemblPlantsGene:Bra008919	EnsemblPlants:Bra008919.1	EnsemblPlants:Bra008919.1-P	InterPro:C-N_Hydrolase
InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010	InterPro:IPR036526	UniProt:M4CXH2	PFAM:PF00795
PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF23	SUPFAM:SSF56317	UniParc:UPI0002543F0C	SEG:seg

Description

AT5G12040 (E=8e-147) | carbon-nitrogen hydrolase family protein

Coordinates

chrA10:-:14406105..14408930

Molecular Weight (calculated)

47091.3 Da

IEP (calculated)

8.710

GRAVY (calculated)

-0.263

Length

430 amino acids

Sequence
(BLAST)

001: MKSTVSSSLL NLKYLLNPNL RRRLISLTSV SIPKLSLSSI TNHTTLNNLF PSSATSGLRT ICSSTASSFK PEQARVPSAL PLPAPPLTKF NMGLCQLSVT
101: TDKKRNISHA KSAIEEAASK GAKLVLLSEM WNTPYTKGSF RAFAEDIDAG GDASPSTAML SEVSKRLKVT IIGGSMPEKS GGRLYNTCCV FGSDGELKAK
201: HRKIHLFDID IPGKITYKES RTFTAGETPT VVDTDVGRIG IGICYDIRFQ ELAMMYAARG AHLLCYPGAF NMTTGPLHWE ILQRARATDN QLYVATCSSA
301: RDYGSCYVAW GHSSLVGPFG EIIAKTEPEE AIIIAEIDYS FLEQRRSNLP LNKQRRGDLY QLVDIQRLDK GSHTWSIVPL NLAGKEQVPY ACGEEARTCE
401: GPICRREHTH NNASRDSVGP RTDTVESFTA

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.