Factsheet for GSMUA_Achr1P21960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91177	Canola	cytosol, extracellular, nucleus	33.22	82.93
Os03t0175600-01	Rice	mitochondrion	83.06	82.26
KXG40066	Sorghum	plastid	85.02	73.94
CDX91178	Canola	plastid	40.72	72.67
GSMUA_Achr1P12420_001	Banana	mitochondrion	84.04	72.07
HORVU4Hr1G076100.13	Barley	plastid	81.11	71.97
TraesCS4D01G290800.1	Wheat	plastid	81.11	71.76
TraesCS4B01G292100.1	Wheat	plastid	80.78	71.26
VIT_04s0008g01690.t01	Wine grape	plastid	84.36	71.15
TraesCS4A01G012200.1	Wheat	golgi, unclear	80.46	70.98
Bra006138.1-P	Field mustard	plastid	82.74	69.78
CDX78463	Canola	plastid	82.74	69.78
KRH52237	Soybean	nucleus	79.48	69.32
Solyc08g062190.2.1	Tomato	plastid	83.06	68.73
CDX70441	Canola	plastid	82.08	68.66
AT5G12040.1	Thale cress	plastid	82.41	68.56
Solyc07g041280.2.1	Tomato	plastid	80.13	67.96
PGSC0003DMT400050357	Potato	cytosol	71.66	61.97
KRG89323	Soybean	plastid	45.6	60.61
CDX97163	Canola	plastid	75.57	60.57
Zm00001d027876_P004	Maize	plastid	81.11	57.24
Bra008919.1-P	Field mustard	plastid	74.59	53.26
CDX69711	Canola	plastid	74.27	53.02
Zm00001d048292_P003	Maize	plastid	72.96	52.58
GSMUA_Achr2P19050_001	Banana	cytosol	28.99	31.45
GSMUA_Achr6P19390_001	Banana	cytosol	22.15	24.37
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	23.13	16.75
GSMUA_Achr5P19870_001	Banana	cytosol	23.13	16.67

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	GO:GO:0016787
GO:GO:0016810	EnsemblPlantsGene:GSMUA_Achr1G21960_001	EnsemblPlants:GSMUA_Achr1P21960_001	EnsemblPlants:GSMUA_Achr1T21960_001	InterPro:IPR003010	InterPro:IPR036526
UniProt:M0S204	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317
UniParc:UPI000294E44C	:	:	:	:	:

Description

Omega-amidase NIT2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21960_001]

Coordinates

chr1:-:16489930..16497429

Molecular Weight (calculated)

33660.3 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.125

Length

307 amino acids

Sequence
(BLAST)

001: MASAFKPEES RVPPALQLPT PRVSKFKIAL CQLSVTPDKE RNIAHARKAI EEAARKGAQL VLLPEIWNSP YSNDSFPIYA EDIEAGGDAA PSFSMLSEAA
101: RSLQITIVGG SIPERSGDCL YNTCCVFGTD GILKGKHRKI HLFDIDIPGK ITFKESKTLT AGEHPTIVDT DVGRIGIGIC YDIRFQELAI LYAARGAHLL
201: CYPGAFNMTT GPLHWELLQR ARAADNQLFV ATCSPARDSG AGYIAWGHST LVGPFGEVIA TTEHEEAIIV EEIDYSLIEL RRSNLPLANQ RHGDLYQLVD
301: VQRLNSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.