CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008919.1-P	Field mustard	plastid	99.77	99.77
CDX97163	Canola	plastid	79.53	89.3
CDX91177	Canola	cytosol, extracellular, nucleus	24.42	85.37
AT5G12040.1	Thale cress	plastid	65.12	75.88
CDX91178	Canola	plastid	30.23	75.58
CDX78463	Canola	plastid	63.95	75.55
CDX70441	Canola	plastid	63.95	74.93
GSMUA_Achr1P21960_001	Banana	cytosol	53.02	74.27
Os03t0175600-01	Rice	mitochondrion	50.93	70.65
KRH52237	Soybean	nucleus	57.44	70.17
VIT_04s0008g01690.t01	Wine grape	plastid	57.44	67.86
KXG40066	Sorghum	plastid	54.42	66.29
Solyc08g062190.2.1	Tomato	plastid	56.98	66.04
HORVU4Hr1G076100.13	Barley	plastid	53.02	65.9
TraesCS4A01G012200.1	Wheat	golgi, unclear	52.56	64.94
TraesCS4B01G292100.1	Wheat	plastid	52.33	64.66
TraesCS4D01G290800.1	Wheat	plastid	51.86	64.27
GSMUA_Achr1P12420_001	Banana	mitochondrion	51.4	61.73
PGSC0003DMT400050357	Potato	cytosol	50.0	60.56
KRG89323	Soybean	plastid	30.23	56.28
Zm00001d027876_P004	Maize	plastid	53.49	52.87
Zm00001d048292_P003	Maize	plastid	46.74	47.18
CDY70138	Canola	plastid	19.3	27.85
CDX75139	Canola	plastid	18.84	27.18
CDY30547	Canola	cytosol	17.44	25.25
CDX77117	Canola	cytosol	17.44	25.08
CDY18713	Canola	cytosol	19.3	20.34
CDX81223	Canola	cytosol	19.07	20.1
CDX84520	Canola	cytosol	18.84	19.85
CDY58268	Canola	nucleus	18.37	19.36
CDX71452	Canola	plastid	6.51	12.67

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	GO:A0A078BYA2	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	EnsemblPlants:CDX69711
ProteinID:CDX69711	ProteinID:CDX69711.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	EnsemblPlantsGene:GSBRNA2T00135741001	InterPro:IPR003010	InterPro:IPR036526
PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30	SUPFAM:SSF56317	UniParc:UPI0004EF20A9
SEG:seg	:	:	:	:	:

Description

BnaA10g20600D

Coordinates

chrLK031790:-:1482883..1485770

Molecular Weight (calculated)

47113.4 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.262

Length

430 amino acids

Sequence
(BLAST)

001: MKSTVSSSLL NLKYLLNPNL RRRLISLTSV SIPKLSLSSI TNHTTLNNLF PSSATSGLRT ICSSTASSFK PEQARVPSAL PLPAPPLTKF NMGLCQLSVT
101: TDKKRNISHA KSAIEEAASK GAKLVLLSEM WNTPYTKGSF RAFAEDIDAG GDASPSTAML SEVSKRLKVT IIGGSMPEKS GGRLYNTCCV FGSHGELKAK
201: HRKIHLFDID IPGKITYKES RTFTAGETPT VVDTDVGRIG IGICYDIRFQ ELAMMYAARG AHLLCYPGAF NMTTGPLHWE ILQRARATDN QLYVATCSSA
301: RDYGSCYVAW GHSSLVGPFG EIIAKTEPEE AIIIAEIDYS FLEQRRSNLP LNKQRRGDLY QLVDIQRLDK GSHTWSIVPL NLAGKEQVPY ACGEEARTCE
401: GPICRREHTH NNASRDSVGP RTDTVESFTA

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.