CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	82.93	33.22
CDX78463	Canola	plastid	93.5	31.59
AT5G12040.1	Thale cress	plastid	94.31	31.44
Os03t0175600-01	Rice	mitochondrion	78.86	31.29
CDX70441	Canola	plastid	92.68	31.06
KRH52237	Soybean	nucleus	87.8	30.68
HORVU4Hr1G076100.13	Barley	plastid	82.11	29.19
TraesCS4D01G290800.1	Wheat	plastid	80.49	28.53
TraesCS4B01G292100.1	Wheat	plastid	80.49	28.45
TraesCS4A01G012200.1	Wheat	golgi, unclear	80.49	28.45
KXG40066	Sorghum	plastid	81.3	28.33
VIT_04s0008g01690.t01	Wine grape	plastid	83.74	28.3
CDX97163	Canola	plastid	86.18	27.68
Solyc08g062190.2.1	Tomato	plastid	78.86	26.15
GSMUA_Achr1P12420_001	Banana	mitochondrion	75.61	25.98
CDX69711	Canola	plastid	85.37	24.42
PGSC0003DMT400050357	Potato	cytosol	67.48	23.38
Zm00001d027876_P004	Maize	plastid	74.8	21.15
Zm00001d048292_P003	Maize	plastid	65.04	18.78
KRG89323	Soybean	plastid	23.58	12.55
CDY30547	Canola	cytosol	29.27	12.12
CDX77117	Canola	cytosol	29.27	12.04
CDY70138	Canola	plastid	28.46	11.74
CDX75139	Canola	plastid	27.64	11.41
CDX71452	Canola	plastid	12.2	6.79
CDY58268	Canola	nucleus	18.7	5.64
CDY18713	Canola	cytosol	18.7	5.64
CDX81223	Canola	cytosol	18.7	5.64
CDX84520	Canola	cytosol	17.89	5.39
CDX91178	Canola	plastid	4.07	2.91

Protein Annotations

EnsemblPlants:CDX91177	EnsemblPlantsGene:GSBRNA2T00151980001	Gene3D:3.60.110.10	GO:A0A078DQH3	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088
PANTHER:PTHR23088:SF23	PFAM:PF00795	PFscan:PS50263	ProteinID:CDX91177	ProteinID:CDX91177.1	SEG:seg
SUPFAM:SSF56317	UniParc:UPI0004EE6F07	MapMan:35.1	:	:	:

Description

BnaC02g04200D

Coordinates

chrLK031865:-:1237709..1238579

Molecular Weight (calculated)

13712.5 Da

IEP (calculated)

5.627

GRAVY (calculated)

0.046

Length

123 amino acids

Sequence
(BLAST)

001: MVLLVVADVG RIGIGICYDI RFQELAMIYA ARGAHLLARA TDNQLYVATC SPARDSGASY TAWGHSTLVG PFGEVLATTE HEEAIIIAEI DYSILEQRRY
101: LPLNKQRRGD LYQLVDIQRL DSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.