CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78463	Canola	plastid	97.55	98.35
AT5G12040.1	Thale cress	plastid	93.73	93.22
CDX91177	Canola	cytosol, extracellular, nucleus	31.06	92.68
CDX91178	Canola	plastid	40.05	85.47
GSMUA_Achr1P21960_001	Banana	cytosol	68.66	82.08
Os03t0175600-01	Rice	mitochondrion	64.85	76.77
VIT_04s0008g01690.t01	Wine grape	plastid	75.48	76.1
KRH52237	Soybean	nucleus	72.21	75.28
CDX97163	Canola	plastid	77.66	74.41
Solyc08g062190.2.1	Tomato	plastid	73.57	72.78
KXG40066	Sorghum	plastid	68.12	70.82
HORVU4Hr1G076100.13	Barley	plastid	65.94	69.94
TraesCS4B01G292100.1	Wheat	plastid	65.4	68.97
TraesCS4D01G290800.1	Wheat	plastid	65.12	68.88
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.12	68.68
GSMUA_Achr1P12420_001	Banana	mitochondrion	65.4	67.04
CDX69711	Canola	plastid	74.93	63.95
PGSC0003DMT400050357	Potato	cytosol	61.85	63.94
KRG89323	Soybean	plastid	39.51	62.77
Zm00001d027876_P004	Maize	plastid	64.85	54.71
Zm00001d048292_P003	Maize	plastid	58.86	50.7
CDY70138	Canola	plastid	23.43	28.86
CDX75139	Canola	plastid	23.16	28.52
CDY30547	Canola	cytosol	20.71	25.59
CDX77117	Canola	cytosol	20.71	25.42
CDY18713	Canola	cytosol	20.98	18.87
CDX81223	Canola	cytosol	20.71	18.63
CDX84520	Canola	cytosol	20.44	18.38
CDY58268	Canola	nucleus	19.89	17.89
CDX71452	Canola	plastid	7.9	13.12

Protein Annotations

EnsemblPlants:CDX70441	EnsemblPlantsGene:GSBRNA2T00140255001	Gene3D:3.60.110.10	GO:A0A078C0I3	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088
PANTHER:PTHR23088:SF30	PFAM:PF00795	PFscan:PS50263	ProteinID:CDX70441	ProteinID:CDX70441.1	SEG:seg
SUPFAM:SSF56317	UniParc:UPI0004EF062B	MapMan:4.1.2.1.4	:	:	:

Description

BnaC03g05250D

Coordinates

chrLK031791:+:427889..430314

Molecular Weight (calculated)

39875.8 Da

IEP (calculated)

8.647

GRAVY (calculated)

-0.184

Length

367 amino acids

Sequence
(BLAST)

001: MKSAVSSSLF FHSKNLLKPN PLSRLESVCL PKPSRRSIVK LPSSSTSGLR SISSSSSSSS MASSFKPEQA RVPSALPLPA PPLTKFNIGL CQLSVTADKS
101: RNISHAKNAI EEAASKGAKL VLLPEIWNSP YSNDSFPVYA EEIDAGGDAS PSTAMLSEVS KRLKITIIGG SIPERVGDRL YNTCCVFGSD GELKAKHRKI
201: HLFDIDIPGK ITFMESKTLT AGETPTIVDT DVGRIGIGIC YDIRFQELAM IYAARGAHLL CYPGAFNMTT GPLHWELLQR ARATDNQLYV ATCSPARDSG
301: AGYTAWGHST LIGPFGEVLA TTEHEEAIII AEIDHSILEQ RRTSLPLNKQ RRGDLYQLVD VQRLNSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.