Factsheet for TraesCS4D01G290800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G292100.1	Wheat	plastid	98.56	98.28
TraesCS4A01G012200.1	Wheat	golgi, unclear	97.98	97.7
HORVU4Hr1G076100.13	Barley	plastid	96.54	96.82
Os03t0175600-01	Rice	mitochondrion	82.42	92.26
KXG40066	Sorghum	plastid	85.88	84.42
GSMUA_Achr1P21960_001	Banana	cytosol	71.76	81.11
CDX91177	Canola	cytosol, extracellular, nucleus	28.53	80.49
KRH52237	Soybean	nucleus	68.01	67.05
VIT_04s0008g01690.t01	Wine grape	plastid	70.32	67.03
Bra006138.1-P	Field mustard	plastid	69.16	65.93
CDX78463	Canola	plastid	69.16	65.93
Solyc08g062190.2.1	Tomato	plastid	70.32	65.77
CDX91178	Canola	plastid	32.56	65.7
GSMUA_Achr1P12420_001	Banana	mitochondrion	67.72	65.64
Zm00001d027876_P004	Maize	plastid	81.84	65.29
CDX70441	Canola	plastid	68.88	65.12
AT5G12040.1	Thale cress	plastid	69.16	65.04
Solyc07g041280.2.1	Tomato	plastid	67.72	64.92
TraesCS7D01G167300.1	Wheat	plastid	52.16	62.41
PGSC0003DMT400050357	Potato	cytosol	61.67	60.28
CDX97163	Canola	plastid	65.99	59.79
Zm00001d048292_P003	Maize	plastid	71.47	58.22
KRG89323	Soybean	plastid	37.75	56.71
Bra008919.1-P	Field mustard	plastid	64.55	52.09
CDX69711	Canola	plastid	64.27	51.86
TraesCS5D01G121200.1	Wheat	plastid	26.8	30.79
TraesCS5D01G031200.1	Wheat	golgi	23.05	26.58
TraesCS5D01G292000.1	Wheat	cytosol	21.9	18.49

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0050152
InterPro:IPR003010	InterPro:IPR036526	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30
SUPFAM:SSF56317	EnsemblPlantsGene:TraesCS4D01G290800	EnsemblPlants:TraesCS4D01G290800.1	TIGR:cd07572	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:461780892..461785280

Molecular Weight (calculated)

37476.7 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.113

Length

347 amino acids

Sequence
(BLAST)

001: MRAAATSTAF SLLSPSRLRT SAPTTTSLPY RRRPRIAAMA TAAASFRPEA ARSPPAVEPP APPLSKFKVA LCQLSVTADK ARNIARARAA IESAAADGAK
101: LVLLPIWNGP YSNDSFPEYA EDIEAGGDAA PSFSMMSDVA RSLQITLVGG SISERSGNSL YNTCCVFGSD GKLKGKHRKV HLFDIDIPGK ITFQESKTLT
201: AGQDLTIVDT DVGRIGIGIC YDIRFQELAM LYAARGAHLL CYPGAFNMTT GPLHWELLQR ARAADNQLFV ATCAPARDTS SSYVAWGHST LVGPFGEVIA
301: TIEHDEATII AEIDYSLIEQ RRQFLPLRHQ RRGDLYQLVD VQGSGSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.