Factsheet for TraesCS4A01G012200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G292100.1	Wheat	plastid	98.28	98.28
TraesCS4D01G290800.1	Wheat	plastid	97.7	97.98
HORVU4Hr1G076100.13	Barley	plastid	97.13	97.69
Os03t0175600-01	Rice	mitochondrion	81.9	91.94
KXG40066	Sorghum	plastid	86.49	85.27
CDX91177	Canola	cytosol, extracellular, nucleus	28.45	80.49
GSMUA_Achr1P21960_001	Banana	cytosol	70.98	80.46
KRH52237	Soybean	nucleus	67.82	67.05
VIT_04s0008g01690.t01	Wine grape	plastid	70.11	67.03
Solyc08g062190.2.1	Tomato	plastid	70.4	66.04
Bra006138.1-P	Field mustard	plastid	68.97	65.93
CDX78463	Canola	plastid	68.97	65.93
Zm00001d027876_P004	Maize	plastid	82.18	65.75
Solyc07g041280.2.1	Tomato	plastid	68.1	65.47
GSMUA_Achr1P12420_001	Banana	mitochondrion	67.24	65.36
CDX70441	Canola	plastid	68.68	65.12
CDX91178	Canola	plastid	32.18	65.12
AT5G12040.1	Thale cress	plastid	68.97	65.04
TraesCS7A01G166700.1	Wheat	cytosol	42.53	63.79
CDX97163	Canola	plastid	66.67	60.57
PGSC0003DMT400050357	Potato	cytosol	61.49	60.28
Zm00001d048292_P003	Maize	plastid	71.84	58.69
KRG89323	Soybean	plastid	37.64	56.71
Bra008919.1-P	Field mustard	plastid	65.23	52.79
CDX69711	Canola	plastid	64.94	52.56
TraesCS5A01G108700.1	Wheat	plastid	27.87	31.19
TraesCS5A01G024500.1	Wheat	cytosol	23.56	27.33
TraesCS5A01G284600.1	Wheat	golgi	22.7	19.22

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006107	GO:GO:0006108	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0050152
InterPro:IPR003010	InterPro:IPR036526	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF30
SUPFAM:SSF56317	EnsemblPlantsGene:TraesCS4A01G012200	EnsemblPlants:TraesCS4A01G012200.1	TIGR:cd07572	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:6932754..6937660

Molecular Weight (calculated)

37581.7 Da

IEP (calculated)

8.126

GRAVY (calculated)

-0.147

Length

348 amino acids

Sequence
(BLAST)

001: MRAAATSTAF SLLSPSRLRT SAPTTSSLPY RRRPRIAAMA AAASSFRPEA ARSPPAVEPP APPLSKFKVA LCQLSVTADK ARNIARARAA IESAAADGAK
101: LVLLPEIWNG PYSNESFPEY AEDIEAGGDA APSFSMMSDV ARSLQITLVG GSISERSGNS LYNTCCVFGS DGKLKGKHRK VHLFDIDIPG KITFQESKTL
201: TAGQDLTVVD TDVGRIGIGI CYDIRFQELA MLYAARGAHL LCYPGAFNMT TGPLHWELLQ RARAADNQLF VATCAPARDT SSSYVAWGHS TLVGPFGEVI
301: ATTEHDESTI IAEIDYSLIE QRRQFLPLRH QRRGDLYQLV DVQGSGSK

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.