CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91177	Canola	cytosol, extracellular, nucleus	27.68	86.18
CDX69711	Canola	plastid	89.3	79.53
CDX78463	Canola	plastid	74.41	78.3
CDX70441	Canola	plastid	74.41	77.66
AT5G12040.1	Thale cress	plastid	74.67	77.51
CDX91178	Canola	plastid	33.94	75.58
GSMUA_Achr1P21960_001	Banana	cytosol	60.57	75.57
KRH52237	Soybean	nucleus	66.06	71.88
Os03t0175600-01	Rice	mitochondrion	57.96	71.61
VIT_04s0008g01690.t01	Wine grape	plastid	67.1	70.6
KXG40066	Sorghum	plastid	62.66	67.99
Solyc08g062190.2.1	Tomato	plastid	65.54	67.66
HORVU4Hr1G076100.13	Barley	plastid	60.84	67.34
TraesCS4A01G012200.1	Wheat	golgi, unclear	60.57	66.67
TraesCS4B01G292100.1	Wheat	plastid	60.31	66.38
TraesCS4D01G290800.1	Wheat	plastid	59.79	65.99
GSMUA_Achr1P12420_001	Banana	mitochondrion	57.44	61.45
PGSC0003DMT400050357	Potato	cytosol	56.14	60.56
KRG89323	Soybean	plastid	34.99	58.01
Zm00001d027876_P004	Maize	plastid	60.84	53.56
Zm00001d048292_P003	Maize	plastid	53.26	47.89
CDY70138	Canola	plastid	21.93	28.19
CDX75139	Canola	plastid	21.67	27.85
CDY30547	Canola	cytosol	20.37	26.26
CDX77117	Canola	cytosol	20.37	26.09
CDX81223	Canola	cytosol	21.41	20.1
CDY18713	Canola	cytosol	21.15	19.85
CDY58268	Canola	nucleus	20.63	19.36
CDX84520	Canola	cytosol	20.37	19.12
CDX71452	Canola	plastid	7.57	13.12

Protein Annotations

EnsemblPlants:CDX97163	EnsemblPlantsGene:GSBRNA2T00104157001	Gene3D:3.60.110.10	GO:A0A078ECU2	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR23088
PANTHER:PTHR23088:SF23	PFAM:PF00795	PFscan:PS50263	ProteinID:CDX97163	ProteinID:CDX97163.1	SEG:seg
SUPFAM:SSF56317	UniParc:UPI0004EE5EAA	MapMan:4.1.2.1.4	:	:	:

Description

BnaC09g44620D

Coordinates

chrLK031897:+:975666..978347

Molecular Weight (calculated)

42259.9 Da

IEP (calculated)

8.799

GRAVY (calculated)

-0.170

Length

383 amino acids

Sequence
(BLAST)

001: MKSAVSSSLL NFKNLLIPNP RRRRLTSLTS VFLPKLSLNS ITNHTALNLL PSSATSGLRF ISSSSMESSF KPEQARVPSA LPLPAPPLTK FNMGLCQLSV
101: TTDKKRNISH AKDAIEEAAS KGAKLVLLSE MWNTPYTKGS FRVFAEDVDA GGDASPSTAM LSEVSKRLKI TIIGGSIPEK SGGRLYNTCC VFGSDGELKA
201: KHRKIHLFDI DIPGKITYME SRTFTPGETP TVVDTDVGRI GIGICYDIRF QELAMMYAAR GAHLLCYPGA FNMTTGPLHW ELLQRARATD NQLYVATCSS
301: ARDYGYCYVA WGHSSLVGPF GEIIATTEHE EAIIIAEIDY SFLEQRRSNL PLNKQRRGDL YQLVDIQRLN KQMNAAEVVH VEM

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.