Factsheet for GSMUA_Achr1P12420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21960_001	Banana	cytosol	72.07	84.04
CDX91177	Canola	cytosol, extracellular, nucleus	25.98	75.61
Os03t0175600-01	Rice	mitochondrion	64.53	74.52
KXG40066	Sorghum	plastid	68.72	69.69
HORVU4Hr1G076100.13	Barley	plastid	66.48	68.79
TraesCS4D01G290800.1	Wheat	plastid	65.64	67.72
TraesCS4B01G292100.1	Wheat	plastid	65.64	67.53
CDX91178	Canola	plastid	32.4	67.44
TraesCS4A01G012200.1	Wheat	golgi, unclear	65.36	67.24
Bra006138.1-P	Field mustard	plastid	67.6	66.48
CDX78463	Canola	plastid	67.6	66.48
AT5G12040.1	Thale cress	plastid	68.16	66.12
CDX70441	Canola	plastid	67.04	65.4
Solyc07g041280.2.1	Tomato	plastid	65.92	65.19
VIT_04s0008g01690.t01	Wine grape	plastid	66.2	65.11
KRH52237	Soybean	nucleus	63.41	64.49
Solyc08g062190.2.1	Tomato	plastid	65.36	63.07
PGSC0003DMT400050357	Potato	cytosol	59.22	59.72
CDX97163	Canola	plastid	61.45	57.44
KRG89323	Soybean	plastid	36.31	56.28
Zm00001d027876_P004	Maize	plastid	65.64	54.02
Bra008919.1-P	Field mustard	plastid	62.01	51.63
CDX69711	Canola	plastid	61.73	51.4
Zm00001d048292_P003	Maize	plastid	58.1	48.83
GSMUA_Achr2P19050_001	Banana	cytosol	24.02	30.39
GSMUA_Achr6P19390_001	Banana	cytosol	18.72	24.01
GSMUA_Achr5P19870_001	Banana	cytosol	22.63	19.01
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	22.35	18.87

Protein Annotations

Gene3D:3.60.110.10	MapMan:4.1.2.1.4	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	EnsemblPlantsGene:GSMUA_Achr1G12420_001
EnsemblPlants:GSMUA_Achr1P12420_001	EnsemblPlants:GSMUA_Achr1T12420_001	InterPro:IPR003010	InterPro:IPR036526	UniProt:M0RZA0	PFAM:PF00795
PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF23	SUPFAM:SSF56317	UniParc:UPI0002966A3F	SEG:seg

Description

Omega-amidase NIT2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G12420_001]

Coordinates

chr1:-:9488864..9497274

Molecular Weight (calculated)

38765.8 Da

IEP (calculated)

7.179

GRAVY (calculated)

0.010

Length

358 amino acids

Sequence
(BLAST)

001: MRGALTIRPS SAPLLTAGQP LLRLSRGTIN RRIPATTPPP CLRLTTAVAV GSAFQPDEAT VPAPLPLPVP PVSKFKIALC QLSVTPEKER NIARARKAIE
101: EAAGRGAQLV LLPEIWNSPF SNDNFPVYAE DIEGVGDAAP SFSMLSEAAR SLQITIIGGS IPERSGDRLY NTCCVFGTDG KLLGKHRKIH LFDIDIPGEI
201: TFKESNTLTA GEHATIVDTD VGRIGIGICH DIRFPELAIL YAARGAHLLC YPGAFNITTG SLLWELMQRA RAADNQLFVA TCSPARDTGA CYVAWGHSTL
301: VGPFGEVIAM AGHEEAIIVE EVDYSLIELR RSSIPLNQQR RGDLYRLVDV HRLNSRGL

Best Arabidopsis Sequence Match ( AT5G12040.1 )
(BLAST)

001: MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS SSMASSFNPE QARVPSALPL PAPPLTKFNI GLCQLSVTSD
101: KKRNISHAKK AIEEAASKGA KLVLLPEIWN SPYSNDSFPV YAEEIDAGGD ASPSTAMLSE VSKRLKITII GGSIPERVGD RLYNTCCVFG SDGELKAKHR
201: KIHLFDIDIP GKITFMESKT LTAGETPTIV DTDVGRIGIG ICYDIRFQEL AMIYAARGAH LLCYPGAFNM TTGPLHWELL QRARATDNQL YVATCSPARD
301: SGAGYTAWGH STLVGPFGEV LATTEHEEAI IIAEIDYSIL EQRRTSLPLN RQRRGDLYQL VDVQRLDSK

Arabidopsis Description

NLP3Omega-amidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RUF8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.