Factsheet for TraesCS5A01G284600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G283800.2	Wheat	cytosol	98.3	98.3
TraesCS5D01G292000.1	Wheat	cytosol	98.05	98.05
EER99388	Sorghum	cytoskeleton, cytosol, peroxisome	91.0	90.56
Zm00001d021506_P001	Maize	extracellular, plasma membrane	90.27	89.61
Os07t0485100-01	Rice	cytoskeleton, cytosol, peroxisome	89.78	89.35
HORVU5Hr1G076080.1	Barley	mitochondrion	98.05	83.96
AT5G64370.1	Thale cress	cytosol	78.59	79.17
Bra024290.1-P	Field mustard	cytosol	78.35	78.92
CDY58268	Canola	nucleus	78.35	78.92
CDY18713	Canola	cytosol	78.1	78.68
CDX81223	Canola	cytosol	78.1	78.68
VIT_03s0017g00550.t01	Wine grape	cytosol	78.83	78.45
KRH49832	Soybean	cytosol	77.86	78.43
Bra037776.1-P	Field mustard	cytosol	77.86	78.43
PGSC0003DMT400074637	Potato	cytosol	78.1	78.29
CDX84520	Canola	cytosol	77.62	78.19
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	80.54	78.07
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	77.86	78.05
GSMUA_Achr5P19870_001	Banana	cytosol	80.29	77.46
TraesCS5A01G024500.1	Wheat	cytosol	20.92	28.67
TraesCS7A01G166700.1	Wheat	cytosol	14.11	25.0
TraesCS4A01G012200.1	Wheat	golgi, unclear	19.22	22.7
TraesCS5A01G108700.1	Wheat	plastid	15.33	20.26

Protein Annotations

Gene3D:3.60.110.10	MapMan:6.2.4.5	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0003837	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006212	GO:GO:0006807	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787	GO:GO:0043562
InterPro:IPR003010	InterPro:IPR036526	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674	PANTHER:PTHR43674:SF2
SUPFAM:SSF56317	EnsemblPlantsGene:TraesCS5A01G284600	EnsemblPlants:TraesCS5A01G284600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:-:492826350..492829019

Molecular Weight (calculated)

45665.3 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.293

Length

411 amino acids

Sequence
(BLAST)

001: MESSNGKPPR GEEEGKAAGS IGGHESLHRL LESNLPPELF KEASRLLLGL NCAHPLEAIS LPGATTDLAG AHNFDVQAFR FNADKEHMRQ PRIVRVGLIQ
101: NSIAVPTTCH FADQKKSIME KVKPIIDAAG ASGVNILCLQ EAWTMPFAFC TREKRWCEFA EPVDGESTQF LQELAQKYNM VIVSPILERD INHGETIWNT
201: VVVIGNNGNI IGIHRKNHIP RVGDFNESTY YMEGNTGHPV FETAYGKIAV NICYGRHHPL NWLAFGLNGA EIVFNPSATV GELSEPMWPI EARNAAIANS
301: YFVGSINRVG TEVFPNPFTS GDGKPQHADF GHFYGSSHFS APDASCTPSL SRYRDGLMIS DMDLNLCRQI KDKWAFRMTA RYDMYADLLS EYLKPDFKPQ
401: IIADPLINKR A

Best Arabidopsis Sequence Match ( AT5G64370.1 )
(BLAST)

001: MDHMISENGE TSAEGSICGY DSLHQLLSAN LKPELYQEVN RLLLGRNCGR SLEQIVLPES AKALSSKHDF DLQAASFSAD KEQMRNPRVV RVGLIQNSIA
101: LPTTAPFSDQ TRGIFDKLKP IIDAAGVAGV NILCLQEAWT MPFAFCTRER RWCEFAEPVD GESTKFLQEL AKKYNMVIVS PILERDIDHG EVLWNTAVII
201: GNNGNIIGKH RKNHIPRVGD FNESTYYMEG DTGHPVFETV FGKIAVNICY GRHHPLNWLA FGLNGAEIVF NPSATVGELS EPMWPIEARN AAIANSYFVG
301: SINRVGTEVF PNPFTSGDGK PQHNDFGHFY GSSHFSAPDA SCTPSLSRYK DGLLISDMDL NLCRQYKDKW GFRMTARYEV YADLLAKYIK PDFKPQVVSD
401: PLLHKNST

Arabidopsis Description

PYD3Beta-ureidopropionase [Source:UniProtKB/Swiss-Prot;Acc:Q8H183]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.