CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021506_P001	Maize	extracellular, plasma membrane	97.09	96.86
TraesCS5D01G292000.1	Wheat	cytosol	90.56	91.0
TraesCS5A01G284600.1	Wheat	golgi	90.56	91.0
TraesCS5B01G283800.2	Wheat	cytosol	90.31	90.75
Os07t0485100-01	Rice	cytoskeleton, cytosol, peroxisome	89.1	89.1
AT5G64370.1	Thale cress	cytosol	78.93	79.9
Bra024290.1-P	Field mustard	cytosol	78.69	79.66
CDY58268	Canola	nucleus	78.69	79.66
Bra037776.1-P	Field mustard	cytosol	78.45	79.41
VIT_03s0017g00550.t01	Wine grape	cytosol	79.18	79.18
CDY18713	Canola	cytosol	78.21	79.17
Solyc10g047630.1.1	Tomato	endoplasmic reticulum, extracellular, plastid	78.45	79.02
CDX84520	Canola	cytosol	77.97	78.92
PGSC0003DMT400074637	Potato	cytosol	78.21	78.78
CDX81223	Canola	cytosol	77.72	78.68
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	80.39	78.3
KRH49832	Soybean	cytosol	77.0	77.94
HORVU5Hr1G076080.1	Barley	mitochondrion	90.56	77.92
GSMUA_Achr5P19870_001	Banana	cytosol	79.9	77.46
EES05187	Sorghum	cytosol	21.31	29.53
KXG19560	Sorghum	cytosol	16.71	22.7
KXG40066	Sorghum	plastid	19.37	22.66
EES16018	Sorghum	plastid	16.71	20.97

Protein Annotations

Gene3D:3.60.110.10	MapMan:6.2.4.5	EntrezGene:8077442	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	UniProt:C5X8L4
EnsemblPlants:EER99388	ProteinID:EER99388	ProteinID:EER99388.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003837
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006212	GO:GO:0006807	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787	GO:GO:0016810	GO:GO:0043562
InterPro:IPR003010	InterPro:IPR036526	PFAM:PF00795	PFscan:PS50263	PANTHER:PTHR43674	PANTHER:PTHR43674:SF2
EnsemblPlantsGene:SORBI_3002G304000	SUPFAM:SSF56317	unigene:Sbi.1318	UniParc:UPI0001A83F81	RefSeq:XP_002462867.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:67973025..67976243

Molecular Weight (calculated)

45689.3 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.231

Length

413 amino acids

Sequence
(BLAST)

001: MATSNGKAAQ GEEGKTPPPA GSIGGYESLH RLLEANLSPE LFQEASRLLL GLNCAQPLEA ISLPDATTTL AETHNFDVQA FRFSADKEFL RQPRVVRVGL
101: VQNSIAVPTT CHFADQKKAI MDKIKPVIDA AGASGVNILC LQEAWTMPFA FCTREKRWCE FAEPVDGEST QFLQELAQKY NMVIVSPILE RDVNHGETIW
201: NTAVIIGNNG NIIGIHRKNH IPRVGDFNES TYYMEGNTGH PVFETAYGKI GVNICYGRHH PLNWLAFGLN GAEIVFNPSA TVGELSEPMW PIEARNAAIA
301: NSYFVGSINR VGTEVFPNPF TSGDGKPQHA DFGHFYGSSH FSAPDASCTP SLSRYRDGLI ISDMDLNLCR QIKDKWAFRM TARYEMYASL LSEYLKPDFK
401: PQVIVDPLIN KKA

Best Arabidopsis Sequence Match ( AT5G64370.1 )
(BLAST)

001: MDHMISENGE TSAEGSICGY DSLHQLLSAN LKPELYQEVN RLLLGRNCGR SLEQIVLPES AKALSSKHDF DLQAASFSAD KEQMRNPRVV RVGLIQNSIA
101: LPTTAPFSDQ TRGIFDKLKP IIDAAGVAGV NILCLQEAWT MPFAFCTRER RWCEFAEPVD GESTKFLQEL AKKYNMVIVS PILERDIDHG EVLWNTAVII
201: GNNGNIIGKH RKNHIPRVGD FNESTYYMEG DTGHPVFETV FGKIAVNICY GRHHPLNWLA FGLNGAEIVF NPSATVGELS EPMWPIEARN AAIANSYFVG
301: SINRVGTEVF PNPFTSGDGK PQHNDFGHFY GSSHFSAPDA SCTPSLSRYK DGLLISDMDL NLCRQYKDKW GFRMTARYEV YADLLAKYIK PDFKPQVVSD
401: PLLHKNST

Arabidopsis Description

PYD3Beta-ureidopropionase [Source:UniProtKB/Swiss-Prot;Acc:Q8H183]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.