Factsheet for Solyc10g047630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular

Predictor Summary:

cytosol 4
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
endoplasmic reticulum: 29145071

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074637	Potato	cytosol	99.02	99.02
AT5G64370.1	Thale cress	cytosol	82.2	82.6
VIT_03s0017g00550.t01	Wine grape	cytosol	83.17	82.57
Bra037776.1-P	Field mustard	cytosol	80.98	81.37
CDX81223	Canola	cytosol	80.98	81.37
CDY18713	Canola	cytosol	80.98	81.37
Bra024290.1-P	Field mustard	cytosol	80.49	80.88
CDY58268	Canola	nucleus	80.49	80.88
CDX84520	Canola	cytosol	79.76	80.15
Os07t0485100-01	Rice	cytoskeleton, cytosol, peroxisome	80.0	79.42
KRH49832	Soybean	cytosol	78.78	79.17
EER99388	Sorghum	cytoskeleton, cytosol, peroxisome	79.02	78.45
TraesCS5A01G284600.1	Wheat	golgi	78.05	77.86
Zm00001d021506_P001	Maize	extracellular, plasma membrane	78.54	77.78
TraesCS5B01G283800.2	Wheat	cytosol	77.56	77.37
TraesCS5D01G292000.1	Wheat	cytosol	77.56	77.37
GSMUA_Achr5P19870_001	Banana	cytosol	78.78	75.82
GSMUA_Achr11P...	Banana	cytoskeleton, cytosol, peroxisome	76.59	74.06
HORVU5Hr1G076080.1	Barley	mitochondrion	77.8	66.46
Solyc11g068540.1.1	Tomato	endoplasmic reticulum, extracellular	21.46	29.33
Solyc06g064880.2.1	Tomato	plastid	16.34	21.97
Solyc08g062190.2.1	Tomato	plastid	18.54	20.49
Solyc07g041280.2.1	Tomato	plastid	18.05	20.44
Solyc05g054940.2.1	Tomato	plastid	13.9	20.28

Protein Annotations

EnsemblPlants:Solyc10g047630.1.1	EnsemblPlantsGene:Solyc10g047630.1	Gene3D:3.60.110.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf
InterPro:IPR003010	InterPro:IPR036526	PANTHER:PTHR43674	PANTHER:PTHR43674:SF2	PFAM:PF00795	PFscan:PS50263
SEG:seg	SUPFAM:SSF56317	UniParc:UPI0002769D6E	UniProt:K4D025	MapMan:6.2.4.5	:

Description

No Description!

Coordinates

chr10:+:41497651..41501518

Molecular Weight (calculated)

45740.4 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.288

Length

410 amino acids

Sequence
(BLAST)

001: MEKREGEETE NGTTQEKGSI CGFDSLYHLL QTSLSPQLFQ EVNRILLGLN CGKKLESIAL PQPVKALSAN HDFDLQAFSF SADKESLRGP RVVRVGLIQN
101: SIALPTTEPF LNQREAIFQK LIPMIDAAGS SGVNILCLQE AWTMPFAFCT REKKWCEFAE EIDGESTKFL QQLAQKYNMV IISPILERDV NHGETLWNTA
201: VIIGNHGNII GKHRKNHIPR VGDFNESTYY MEGNTGHPVF ETAYGKIAVN ICYGRHHPLN WLAFGLNGAE IVFNPSATVG ELSEPMWPIE ARNAAIANSY
301: FVGSINRVGT EVFPNPFTSG DGKPQHADFG HFYGSSHFSA PDASCTPSLA RHKDGLLISD MDLNLCRQLK DKWGFRMTAR YDVYADLLAR YVKPDFEPQV
401: ISDPLLHKSG

Best Arabidopsis Sequence Match ( AT5G64370.1 )
(BLAST)

001: MDHMISENGE TSAEGSICGY DSLHQLLSAN LKPELYQEVN RLLLGRNCGR SLEQIVLPES AKALSSKHDF DLQAASFSAD KEQMRNPRVV RVGLIQNSIA
101: LPTTAPFSDQ TRGIFDKLKP IIDAAGVAGV NILCLQEAWT MPFAFCTRER RWCEFAEPVD GESTKFLQEL AKKYNMVIVS PILERDIDHG EVLWNTAVII
201: GNNGNIIGKH RKNHIPRVGD FNESTYYMEG DTGHPVFETV FGKIAVNICY GRHHPLNWLA FGLNGAEIVF NPSATVGELS EPMWPIEARN AAIANSYFVG
301: SINRVGTEVF PNPFTSGDGK PQHNDFGHFY GSSHFSAPDA SCTPSLSRYK DGLLISDMDL NLCRQYKDKW GFRMTARYEV YADLLAKYIK PDFKPQVVSD
401: PLLHKNST

Arabidopsis Description

PYD3Beta-ureidopropionase [Source:UniProtKB/Swiss-Prot;Acc:Q8H183]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.