Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009093.1-P | Field mustard | nucleus | 98.09 | 98.26 |
| CDX98822 | Canola | nucleus | 92.01 | 92.98 |
| CDX80954 | Canola | mitochondrion, nucleus | 61.81 | 63.69 |
| CDY52144 | Canola | nucleus | 62.5 | 58.06 |
| AT5G05190.1 | Thale cress | nucleus | 58.16 | 54.47 |
| PGSC0003DMT400059103 | Potato | nucleus | 24.65 | 15.06 |
| KRH72549 | Soybean | nucleus | 25.17 | 13.74 |
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 20.83 | 13.67 |
| KRH53706 | Soybean | nucleus | 23.26 | 13.66 |
| KRH16932 | Soybean | nucleus | 23.61 | 11.61 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 23.96 | 11.46 |
| CDY27216 | Canola | nucleus | 8.68 | 11.16 |
| CDX72139 | Canola | nucleus | 9.72 | 10.13 |
| CDX67646 | Canola | nucleus | 13.89 | 5.83 |
| CDY32014 | Canola | nucleus | 14.06 | 5.78 |
Protein Annotations
| EnsemblPlants:CDX70170 | EnsemblPlantsGene:GSBRNA2T00136288001 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 | PFAM:PF11331 |
| ProteinID:CDX70170 | ProteinID:CDX70170.1 | SEG:seg | UniParc:UPI0004EE278D | MapMan:35.1 | : |
Description
BnaA10g25190D
Coordinates
chrLK031790:-:3389409..3391629
Molecular Weight (calculated)
64743.4 Da
IEP (calculated)
8.050
GRAVY (calculated)
-1.125
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKSGQRVR LVKCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRTIAPTP TPSAGEAEGA HASEPETNNA SISSEQDTVL PPTTGRSSGQ VDEKASDGSL
101: ESTEKQPGDS IGEEGNENQL QEHSPSDSDK NESEDNSSRF KSDVKPVAEA MGEGTSSGSS NAGHVVDART SNSSSPVEEE QNEDDYFFNR HRESTDDLPA
201: NKTPSTYDGS ESSSDEREEL LDENEQWKAL QEISSVKFQM QRYPENLKEQ RRGSSSSSTF YEKRPSNVTP TTYMERYQNR SLQLEGPGGR LGRQGRRHVT
301: EQLRPNLPLY PREPYNTRVS PSYPSQDEFD GYSRAHSLQR PSYESVVNHM YHNSTRARGR GQGSRFSGEM TNDRRNHPGW YSGSYSSYPA SPQRPPMEQP
401: PAYYPRRWSH EIVSDAEDHQ RYRHAGHHHH DIQARRLKER QQRVAKRHIR PTAGGAPFVS CYKCSESLQL PVDFLIFKRK YHLLRCGRCT TVLRFSLQSR
501: THLVPAVVKR DINANRSSNT TSESPRDKAP SRKPEKLRSS AQEEEVPVAR GSPLHLLMGY STVSQVFKAS QRPPSL
101: ESTEKQPGDS IGEEGNENQL QEHSPSDSDK NESEDNSSRF KSDVKPVAEA MGEGTSSGSS NAGHVVDART SNSSSPVEEE QNEDDYFFNR HRESTDDLPA
201: NKTPSTYDGS ESSSDEREEL LDENEQWKAL QEISSVKFQM QRYPENLKEQ RRGSSSSSTF YEKRPSNVTP TTYMERYQNR SLQLEGPGGR LGRQGRRHVT
301: EQLRPNLPLY PREPYNTRVS PSYPSQDEFD GYSRAHSLQR PSYESVVNHM YHNSTRARGR GQGSRFSGEM TNDRRNHPGW YSGSYSSYPA SPQRPPMEQP
401: PAYYPRRWSH EIVSDAEDHQ RYRHAGHHHH DIQARRLKER QQRVAKRHIR PTAGGAPFVS CYKCSESLQL PVDFLIFKRK YHLLRCGRCT TVLRFSLQSR
501: THLVPAVVKR DINANRSSNT TSESPRDKAP SRKPEKLRSS AQEEEVPVAR GSPLHLLMGY STVSQVFKAS QRPPSL
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
Arabidopsis Description
EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.