Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80954 | Canola | mitochondrion, nucleus | 86.77 | 96.24 |
| Bra005847.1-P | Field mustard | nucleus | 93.23 | 86.92 |
| CDX70170 | Canola | nucleus | 58.06 | 62.5 |
| CDX98822 | Canola | nucleus | 57.26 | 62.28 |
| AT5G05190.1 | Thale cress | nucleus | 56.61 | 57.07 |
| PGSC0003DMT400059103 | Potato | nucleus | 23.39 | 15.38 |
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 20.32 | 14.35 |
| KRH53706 | Soybean | nucleus | 21.94 | 13.86 |
| KRH72549 | Soybean | nucleus | 23.55 | 13.84 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 24.19 | 12.46 |
| KRH16932 | Soybean | nucleus | 22.9 | 12.13 |
| CDX72139 | Canola | nucleus | 9.84 | 11.03 |
| CDY27216 | Canola | nucleus | 7.42 | 10.27 |
| CDX67646 | Canola | nucleus | 13.39 | 6.05 |
| CDY32014 | Canola | nucleus | 12.58 | 5.56 |
Protein Annotations
| EnsemblPlants:CDY52144 | EnsemblPlantsGene:GSBRNA2T00004969001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 |
| PFAM:PF11331 | ProteinID:CDY52144 | ProteinID:CDY52144.1 | SEG:seg | UniParc:UPI0004EF3606 | UniProt:A0A078IRR8 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA03g55230DBnaA03g55230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRR8]
Coordinates
chrLK033059:+:64865..67139
Molecular Weight (calculated)
68476.7 Da
IEP (calculated)
5.095
GRAVY (calculated)
-1.090
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKSGQRVR LVKCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRSTAPKT APSAGEAERA QAKAERDQAT SESPNAAPSA GEAEGAQASE HLNTATSGGE
101: AEGVQASESP NAAPSEGEAE GAQATSEPPS EPETNNVSSS SGQDTVLASP SGQEDEKDQD GSMESTEKQL DGLELSQGEE RNEIQLRELS LGDSDKNEEE
201: DNSSRLKSDM KSVAGTSSGS LNDDPVMEAR RTSDSSSDAF HKLEAEISPD ASPIEEEQQD QEDHLFQPHR DSTDDLPANK TSSAYDGSKS SSDEREDQEE
301: NQQWNALQNI RYPQTFKEQG GSSSSTFSDK RPSGTTTHKE RHQYKSLQLE GPGGRLGRQG RRHVSEQLRP DVPLYPREPY ARLSPSSYPS HDVFDRYSRA
401: HSLQMPPPYE GVDHMYHNNN TRARERGQGS RFSGEMTNHP GWYSSQMYSS YSSYSASPQR LMEQQPEYYP RWSHEIVSDA EDHQRTRHEA RLRRQQPVAK
501: RHIRPTAGGA PFVTCYSCSA NLQLPVDFLI FKRKYHLLRC GTCTTVLRFS LQSRTHLVPA VTHDINANRS SNPENPSSSA AQEEEEEEEI PVARGSPLHR
601: LMGYSTVSQV FKASQRPPSV
101: AEGVQASESP NAAPSEGEAE GAQATSEPPS EPETNNVSSS SGQDTVLASP SGQEDEKDQD GSMESTEKQL DGLELSQGEE RNEIQLRELS LGDSDKNEEE
201: DNSSRLKSDM KSVAGTSSGS LNDDPVMEAR RTSDSSSDAF HKLEAEISPD ASPIEEEQQD QEDHLFQPHR DSTDDLPANK TSSAYDGSKS SSDEREDQEE
301: NQQWNALQNI RYPQTFKEQG GSSSSTFSDK RPSGTTTHKE RHQYKSLQLE GPGGRLGRQG RRHVSEQLRP DVPLYPREPY ARLSPSSYPS HDVFDRYSRA
401: HSLQMPPPYE GVDHMYHNNN TRARERGQGS RFSGEMTNHP GWYSSQMYSS YSSYSASPQR LMEQQPEYYP RWSHEIVSDA EDHQRTRHEA RLRRQQPVAK
501: RHIRPTAGGA PFVTCYSCSA NLQLPVDFLI FKRKYHLLRC GTCTTVLRFS LQSRTHLVPA VTHDINANRS SNPENPSSSA AQEEEEEEEI PVARGSPLHR
601: LMGYSTVSQV FKASQRPPSV
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
Arabidopsis Description
EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.