Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 83.46 | 89.64 |
| KRH53706 | Soybean | nucleus | 26.83 | 25.79 |
| CDX80954 | Canola | mitochondrion, nucleus | 15.06 | 25.4 |
| Bra009093.1-P | Field mustard | nucleus | 15.06 | 24.7 |
| CDX70170 | Canola | nucleus | 15.06 | 24.65 |
| CDX98822 | Canola | nucleus | 14.85 | 24.56 |
| AT5G05190.1 | Thale cress | nucleus | 15.8 | 24.23 |
| CDY52144 | Canola | nucleus | 15.38 | 23.39 |
| KRH72549 | Soybean | nucleus | 25.56 | 22.84 |
| Bra005847.1-P | Field mustard | nucleus | 15.8 | 22.41 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 28.31 | 22.18 |
| KRH16932 | Soybean | nucleus | 25.66 | 20.67 |
| CDY27216 | Canola | nucleus | 6.57 | 13.84 |
| CDX72139 | Canola | nucleus | 6.57 | 11.21 |
| Bra007244.1-P | Field mustard | nucleus | 6.89 | 9.04 |
| CDX67646 | Canola | nucleus | 11.98 | 8.23 |
| CDY32014 | Canola | nucleus | 11.56 | 7.77 |
| Bra003240.1-P | Field mustard | nucleus | 11.45 | 7.35 |
| AT3G56410.2 | Thale cress | nucleus, plastid | 10.07 | 6.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059103 | EnsemblPlantsGene:PGSC0003DMG400022956 | EntrezGene:102587704 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 |
| PFAM:PF11331 | PGSC:PGSC0003DMG400022956 | RefSeq:XP_006367438.1 | RefSeq:XP_015160903.1 | SEG:seg | UniParc:UPI0002965E62 |
| UniProt:M1C3T1 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022956]
Coordinates
chr3:-:36154689..36159296
Molecular Weight (calculated)
105755.0 Da
IEP (calculated)
6.466
GRAVY (calculated)
-0.950
Length
943 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNQATTKVR FVRCPKCQLV LPELADIPVY KCGGCGTILQ AKNRKRAPTK NNVLDQNEIS SASEEACPPL KGDSSPNEWK KSDQGGAGDY NKELPRQLNS
101: TDELPSSSGV SCLENEDPLS KSAVHKGDEH SCSLDEKTEQ YENGSRDHHQ FAGGENFSNR LASSDQLTCP ELGNSIVEAK EDAEGSAIEK REKLELDKDT
201: GCSTHETEQD MEVLPLEVTE QLELDEGNLV DDCTVNDQNR SGVNHKSNSL DENSTYSGCV IHRDKVSSGS RAHEDGIESK SLVEQIIGRG QNDFQGHNAE
301: SSENVRYPKE TSLSAEVASD FEKQSSACSD MFQSILNESI TSDTLMATDY EQFEQFHKEI PSGFDRISSM DTLENQPLNI YRSEPPVNHR NMIRSPTHRS
401: YYGYDGSASS CDENDDIPDQ YNHQPVRKFK EAYPVSPGEF LLDGRSRVNH KMSGESKMVQ RAMNFPTALP GRGHQATEGS NWSQKPQSRK RGQASGGRMT
501: LDKDEHATTF PFISTGSHAG HNHGNPSNYR KNMTHHSGLL PPRKPSDSEP DKIQLLRMVY ELEDQLRQTR ITTRMANGAN GRFSAEPMRD EEYNPSYYDQ
601: FLEDGEVSGD LNYSRYPVRG SHGKGWPQQR KSSRIPFSAE VSHYRHQADC LCSHCSPKVR HFSAQLHPSV CYNKGRGVGY SSCNCCNHLQ SDSSSPQHYS
701: SSEYSRWDHD TKSDDRRHKD HEMKKLYLRE KYSKMRHLRP VAGGAPIISC YYCNELLQLP ADFLLFKRRC HQLRCNACRK VLKFSLQNQI HVVPFHAEAL
801: APPPSEVDDS TGVTDHQNLA YEYHLNSCPR TERISCSDDL GPSFCRSIST EGEPSLPPIQ PRGRTSFNGE ISSSSSYAPT KDRKMKSVMR EPRMGTFGSP
901: EPSAKMSKWG KVSSSEIEEV RPNGGSPLHR LMGYESPSEV IHW
101: TDELPSSSGV SCLENEDPLS KSAVHKGDEH SCSLDEKTEQ YENGSRDHHQ FAGGENFSNR LASSDQLTCP ELGNSIVEAK EDAEGSAIEK REKLELDKDT
201: GCSTHETEQD MEVLPLEVTE QLELDEGNLV DDCTVNDQNR SGVNHKSNSL DENSTYSGCV IHRDKVSSGS RAHEDGIESK SLVEQIIGRG QNDFQGHNAE
301: SSENVRYPKE TSLSAEVASD FEKQSSACSD MFQSILNESI TSDTLMATDY EQFEQFHKEI PSGFDRISSM DTLENQPLNI YRSEPPVNHR NMIRSPTHRS
401: YYGYDGSASS CDENDDIPDQ YNHQPVRKFK EAYPVSPGEF LLDGRSRVNH KMSGESKMVQ RAMNFPTALP GRGHQATEGS NWSQKPQSRK RGQASGGRMT
501: LDKDEHATTF PFISTGSHAG HNHGNPSNYR KNMTHHSGLL PPRKPSDSEP DKIQLLRMVY ELEDQLRQTR ITTRMANGAN GRFSAEPMRD EEYNPSYYDQ
601: FLEDGEVSGD LNYSRYPVRG SHGKGWPQQR KSSRIPFSAE VSHYRHQADC LCSHCSPKVR HFSAQLHPSV CYNKGRGVGY SSCNCCNHLQ SDSSSPQHYS
701: SSEYSRWDHD TKSDDRRHKD HEMKKLYLRE KYSKMRHLRP VAGGAPIISC YYCNELLQLP ADFLLFKRRC HQLRCNACRK VLKFSLQNQI HVVPFHAEAL
801: APPPSEVDDS TGVTDHQNLA YEYHLNSCPR TERISCSDDL GPSFCRSIST EGEPSLPPIQ PRGRTSFNGE ISSSSSYAPT KDRKMKSVMR EPRMGTFGSP
901: EPSAKMSKWG KVSSSEIEEV RPNGGSPLHR LMGYESPSEV IHW
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
Arabidopsis Description
EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.