Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52144 | Canola | nucleus | 96.24 | 86.77 |
| CDX70170 | Canola | nucleus | 63.69 | 61.81 |
| CDX98822 | Canola | nucleus | 62.79 | 61.58 |
| AT5G05190.1 | Thale cress | nucleus | 62.08 | 56.42 |
| PGSC0003DMT400059103 | Potato | nucleus | 25.4 | 15.06 |
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 22.36 | 14.24 |
| KRH53706 | Soybean | nucleus | 23.61 | 13.46 |
| KRH72549 | Soybean | nucleus | 24.69 | 13.08 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 25.22 | 11.71 |
| KRH16932 | Soybean | nucleus | 23.79 | 11.36 |
| CDY27216 | Canola | nucleus | 8.41 | 10.49 |
| CDX72139 | Canola | nucleus | 10.2 | 10.31 |
| CDX67646 | Canola | nucleus | 13.77 | 5.61 |
| CDY32014 | Canola | nucleus | 13.06 | 5.21 |
Protein Annotations
| EnsemblPlants:CDX80954 | EnsemblPlantsGene:GSBRNA2T00134370001 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 | PFAM:PF11331 |
| ProteinID:CDX80954 | ProteinID:CDX80954.1 | SEG:seg | UniParc:UPI0004EE0400 | MapMan:35.1 | : |
Description
BnaC03g02080D
Coordinates
chrLK031823:+:972272..974391
Molecular Weight (calculated)
62549.4 Da
IEP (calculated)
6.122
GRAVY (calculated)
-1.093
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRLGQRVR LVKCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRSTAPKT APSAGEAERA QATSDPPSEL ETNNVSSSSG QDTVLASPSG QEDEKDQDGS
101: IEQSTEKQIG GLELSQGEER NEIQLRELSL GDSDKNEGED NSSRLKSDMR SVAGTSSGSL NDDPVMEARR TSDSSSDAFQ KLEAEISPDA SPIEEEQQDQ
201: EDHVFHPHRD STDDLPANKT SSAYDGSKSS SDEREDQEEN QQWNALQNIR YPQNFKEQGG SSSSTFSDKR PSGTTTHKER HQYKSLQLEG PGGRLGRQGR
301: RHVSEQLRPD VPLYPREPYT RLSPSSYPSH DVFDRYSRAH SLQMPPPYEG VDHMYHNNNT RARERGQGSR FSGEMTNHPG WYSSQMYSSY SSYSASPQRI
401: MEQQPEYYPR WSHEIVSDAE DHQRTRHEAR LRRQQPVAKR HIRPTAGGAP FVSCYSCSAN LQLPVDFLIF KRKYHLLRCG TCNTVLRFSL QSRTHLVPAV
501: THDTNANRTS NPENPSSSAA QGEEEEEEIP VARGSPLHRL MGYSTVSQVF KASQRPPSV
101: IEQSTEKQIG GLELSQGEER NEIQLRELSL GDSDKNEGED NSSRLKSDMR SVAGTSSGSL NDDPVMEARR TSDSSSDAFQ KLEAEISPDA SPIEEEQQDQ
201: EDHVFHPHRD STDDLPANKT SSAYDGSKSS SDEREDQEEN QQWNALQNIR YPQNFKEQGG SSSSTFSDKR PSGTTTHKER HQYKSLQLEG PGGRLGRQGR
301: RHVSEQLRPD VPLYPREPYT RLSPSSYPSH DVFDRYSRAH SLQMPPPYEG VDHMYHNNNT RARERGQGSR FSGEMTNHPG WYSSQMYSSY SSYSASPQRI
401: MEQQPEYYPR WSHEIVSDAE DHQRTRHEAR LRRQQPVAKR HIRPTAGGAP FVSCYSCSAN LQLPVDFLIF KRKYHLLRCG TCNTVLRFSL QSRTHLVPAV
501: THDTNANRTS NPENPSSSAA QGEEEEEEIP VARGSPLHRL MGYSTVSQVF KASQRPPSV
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
Arabidopsis Description
EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.