Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71154 | Canola | nucleus | 63.58 | 75.0 |
| CDY02832 | Canola | nucleus | 72.06 | 71.65 |
| CDY32688 | Canola | nucleus | 67.82 | 69.16 |
| Bra006747.1-P | Field mustard | nucleus | 65.32 | 68.21 |
| CDY61025 | Canola | nucleus | 65.32 | 68.21 |
| Bra020357.1-P | Field mustard | nucleus | 67.24 | 66.73 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 9.83 | 54.84 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 44.32 | 47.03 |
| Zm00001d017254_P002 | Maize | cytosol | 13.68 | 45.81 |
| KRG98291 | Soybean | nucleus | 44.32 | 45.19 |
| KRH30312 | Soybean | nucleus | 43.16 | 43.75 |
| PGSC0003DMT400010646 | Potato | nucleus | 41.43 | 42.32 |
| Solyc06g007110.2.1 | Tomato | nucleus | 41.23 | 42.04 |
| TraesCS3B01G177300.1 | Wheat | plastid | 33.72 | 32.47 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 26.4 | 31.71 |
| TraesCS3A01G150300.2 | Wheat | plastid | 35.45 | 31.19 |
| TraesCS3D01G158200.1 | Wheat | plastid | 34.87 | 30.68 |
| OQU86087 | Sorghum | nucleus | 35.07 | 30.64 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 35.45 | 26.74 |
| Zm00001d039321_P008 | Maize | nucleus | 32.18 | 25.54 |
| Os01t0225100-01 | Rice | nucleus | 12.33 | 22.7 |
| AT3G15390.1 | Thale cress | nucleus | 21.0 | 22.24 |
Protein Annotations
| Gene3D:3.30.1370.110 | MapMan:35.1 | EntrezGene:835986 | ProteinID:AED97089.1 | EMBL:AJ006021 | ArrayExpress:AT5G58720 |
| EnsemblPlantsGene:AT5G58720 | RefSeq:AT5G58720 | TAIR:AT5G58720 | RefSeq:AT5G58720-TAIR-G | EnsemblPlants:AT5G58720.1 | TAIR:AT5G58720.1 |
| EMBL:AY062752 | EMBL:AY085409 | EMBL:AY114674 | Unigene:At.7874 | ProteinID:BAA97340.1 | InterPro:DUF1771 |
| InterPro:IPR002625 | RefSeq:NP_200680.1 | UniProt:O65573 | PFAM:PF08590 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50828 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | SMART:SM00463 |
| SMART:SM01162 | SUPFAM:SSF160443 | InterPro:Smr_dom | InterPro:Smr_dom_sf | UniParc:UPI00000A2540 | SEG:seg |
Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
Coordinates
chr5:-:23719695..23723175
Molecular Weight (calculated)
56657.1 Da
IEP (calculated)
5.617
GRAVY (calculated)
-0.659
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.