Factsheet for Solyc09g082970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067920.2.1
Solyc02g086680.2.1
Solyc03g078620.1.1
Solyc04g055130.1.1
Solyc04g055140.1.1
Solyc04g055150.1.1
Solyc04g078550.2.1
Solyc05g006030.2.1
Solyc06g008600.2.1
Solyc06g050590.2.1
Solyc06g074720.2.1
Solyc06g084040.2.1
Solyc08g015860.2.1
Solyc08g074980.2.1
Solyc09g065990.2.1
Solyc10g079430.1.1
Solyc11g066630.1.1
Solyc12g009570.1.1
Solyc12g017570.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22960.1	Solyc05g006030.2.1	AT1G60010.1	21798944
AT3G22960.1	Solyc08g074980.2.1	AT1G61590.1	21798944
AT3G22960.1	Solyc06g008600.2.1	AT2G30580.1	21798944
AT3G22960.1	Solyc06g084040.2.1	AT2G30580.1	21798944
AT3G22960.1	Solyc09g065990.2.1	AT2G30580.1	21798944
AT3G22960.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT3G22960.1	Solyc06g050590.2.1	AT3G56130.1	21798944
AT3G22960.1	Solyc08g015860.2.1	AT3G59920.1	21798944
AT3G22960.1	Solyc12g017570.1.1	AT3G59920.1	21798944
AT3G22960.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT3G22960.1	Solyc04g078550.2.1	AT4G24240.1	21798944
AT3G22960.1	Solyc06g074720.2.1	AT5G04600.1	21798944
AT3G22960.1	Solyc11g066630.1.1	AT5G04600.1	21798944
AT3G22960.1	Solyc03g078620.1.1	AT5G10210.1	21798944
AT3G22960.1	Solyc04g055130.1.1	AT5G10210.1	21798944
AT3G22960.1	Solyc04g055140.1.1	AT5G10210.1	21798944
AT3G22960.1	Solyc04g055150.1.1	AT5G10210.1	21798944
AT3G22960.1	Solyc02g067920.2.1	AT5G14390.1	21798944
AT3G22960.1	Solyc02g086680.2.1	AT5G14660.1	21798944
AT3G22960.1	Solyc12g009570.1.1	AT5G35410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P16760_001	Banana	cytosol	23.95	89.31
GSMUA_Achr2P17520_001	Banana	cytosol	62.23	88.28
KRG92440	Soybean	cytosol, nucleus	66.44	86.78
GSMUA_Achr4P21110_001	Banana	cytosol	60.37	85.65
GSMUA_Achr4P28510_001	Banana	cytosol	60.37	85.65
KRH34357	Soybean	nucleus	67.45	84.21
VIT_05s0020g04480.t01	Wine grape	plastid	80.1	81.06
Bra001896.1-P	Field mustard	plastid	76.05	79.82
CDY40829	Canola	plastid	77.57	79.72
Bra023780.1-P	Field mustard	plastid	76.9	79.03
CDY35484	Canola	plastid	76.9	79.03
AT3G22960.1	Thale cress	plastid	79.26	78.86
CDX92969	Canola	plastid	75.38	77.74
CDX94878	Canola	plastid	75.89	77.45
Os07t0181000-01	Rice	plastid	72.51	76.65
TraesCS2D01G237900.1	Wheat	plastid	72.01	74.91
TraesCS2A01G240200.1	Wheat	plastid	72.01	74.91
EER95951	Sorghum	plastid	73.19	74.44
Zm00001d034443_P001	Maize	plastid	71.16	73.52
KXG37365	Sorghum	plastid	70.66	72.49
VIT_00s0179g00350.t01	Wine grape	plastid	69.14	72.06
HORVU2Hr1G050140.1	Barley	plastid	72.34	71.03
Zm00001d018961_P002	Maize	plastid	73.19	70.11
TraesCS2B01G257800.1	Wheat	plastid	70.66	67.91
Solyc01g106780.2.1	Tomato	cytosol, plastid	50.59	52.17
Solyc03g007810.2.1	Tomato	plastid	37.27	38.24
Solyc08g077180.2.1	Tomato	plastid	35.24	36.03
Solyc01g049650.2.1	Tomato	cytosol, mitochondrion, plastid	24.62	29.08
Solyc04g008740.2.1	Tomato	plastid	23.78	27.65
Solyc10g083720.1.1	Tomato	plastid	20.74	23.34
Solyc09g008840.2.1	Tomato	unclear	20.4	22.96
Solyc11g007690.1.1	Tomato	cytosol, extracellular, nucleus	18.89	22.86
Solyc06g051930.2.1	Tomato	plastid	17.2	13.49

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:2.40.33.10	MapMan:3.12.8	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	MapMan:5.1.2.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0030955	InterPro:IPR015806	InterPro:IPR036918	UniProt:K4CVS3	PFAM:PF00224
PFAM:PF02887	PRINTS:PR01050	ScanProsite:PS00110	PANTHER:PTHR11817	PANTHER:PTHR11817:SF14	InterPro:Pyr_Knase
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl
InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	EnsemblPlantsGene:Solyc09g082970.2	EnsemblPlants:Solyc09g082970.2.1
TIGRFAMs:TIGR01064	UniParc:UPI000276C526	SEG:seg	:	:	:

Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:K4CVS3]

Coordinates

chr9:+:68643060..68651782

Molecular Weight (calculated)

65160.3 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.111

Length

593 amino acids

Sequence
(BLAST)

001: MSHAINFFVS SPSRSPASLT ISRPSAFVST GSLRVPVKKS LRSLVVKASA ASDLDESQSS PVLVSENGSG GVLSSVTKEY GRNNAVASSA DSSSIEVDTV
101: TEAELKENGF RSTRRTKLIC TIGPATCGFE QLEALAVEGM NVARINMCHG TRDWHRMVIE RVRRLNEEKG FAVAIMMDTE GSEIHMGDLG GASSAKAEDG
201: EIWNFTVRAF DPPLPERTIT VNYDGFAEDV KVGDDLLVDG GMVRFEVIEK IGPDVKCLCT DPGLLLPRAN LTFWRDGKLV RERNAMLPTI SSKDWLDIDF
301: GIAEGVDFIA VSFVKSAEVI KHLKSYIKAR ARDGDIAVIA KIESIDSLRN LEEIIQASDG AMVARGDLGA QIPLEQVPSE QQKIVQLCRQ LNRPVIVASQ
401: LLESMIEYPI PTRAEVADVS EAVRQRGDAL MLSGESAMGQ FPEKALTVLR TVSLRIERRW REQKRREVIE LPSIASSFSD SISEEICNSA AKMANNLEVD
501: ALFVYTKNGH MASLLSRCRP DCPIFAFTTA TSVRRRLNLQ WGLMPFRLNY SDDMESNLNK TFSLLKARGM IKSGDLIIAV SDMLQSIQVM NVP

Best Arabidopsis Sequence Match ( AT3G22960.1 )
(BLAST)

001: MSQSIQFSTP SHTPHLLHLP HSQFNRPLSS ISFRRFPLTT IKYTSIRASS SSSPSPDLDS SSSSSSSQVL LSPNGTGAVK SDERSVVATA VTTDTSGIEV
101: DTVTEAELKE NGFRSTRRTK LICTIGPATC GFEQLEALAV GGMNVARLNM CHGTRDWHRG VIRSVRRLNE EKGFAVAIMM DTEGSEIHMG DLGGEASAKA
201: EDGEVWTFTV RAFDSSRPER TISVSYDGFA EDVRVGDELL VDGGMVRFEV IEKIGPDVKC LCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD
301: IDFGIAEGVD FIAVSFVKSA EVINHLKSYL AARSRGGEIG VIAKIESIDS LTNLEEIILA SDGAMVARGD LGAQIPLEQV PAAQQRIVQV CRALNKPVIV
401: ASQLLESMIE YPTPTRAEVA DVSEAVRQRS DALMLSGESA MGQFPDKALT VLRTVSLRIE RWWREEKRHE SVPLQAIGSS FSDKISEEIC NSAAKMANNL
501: GVDAVFVYTT SGHMASLVSR CRPDCPIFAF TTTTSVRRRL NLQWGLIPFR LSFSDDMESN LNKTFSLLKS RGMIKSGDLV IAVSDMLQSI QVMNVP

Arabidopsis Description

PKP1Plastidial pyruvate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.