Factsheet for Solyc06g050590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061547	Potato	plastid	94.83	95.16
VIT_13s0067g02060.t01	Wine grape	plastid	58.28	58.68
KRG97672	Soybean	endoplasmic reticulum	56.21	56.01
KRH31200	Soybean	mitochondrion	53.79	52.53
GSMUA_Achr1P26670_001	Banana	mitochondrion, plastid	47.24	49.64
Bra007218.1-P	Field mustard	plastid	44.14	47.41
CDY27243	Canola	plastid	44.14	47.41
CDX72171	Canola	plastid	40.34	45.35
GSMUA_Achr8P33740_001	Banana	plastid	43.45	45.32
GSMUA_Achr9P16490_001	Banana	plastid	44.14	44.91
AT3G56130.1	Thale cress	plastid	42.41	43.77
Solyc06g068010.2.1	Tomato	plastid	30.0	31.75

Protein Annotations

Gene3D:2.40.50.100	MapMan:5.1.3.3	InterPro:Biotin_lipoyl	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0045717	InterPro:IPR000089	UniProt:K4C5K3	PFAM:PF00364
PANTHER:PTHR43416	PANTHER:PTHR43416:SF4	SUPFAM:SSF51230	InterPro:Single_hybrid_motif	EnsemblPlantsGene:Solyc06g050590.2	EnsemblPlants:Solyc06g050590.2.1
UniParc:UPI0002766B23	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:33292973..33298644

Molecular Weight (calculated)

30168.1 Da

IEP (calculated)

9.505

GRAVY (calculated)

-0.156

Length

290 amino acids

Sequence
(BLAST)

001: MESAAVLRSF HHSVGTTSHV RSVIEMPGVI PTNNIAFSKP TKFSLKGSSN GARRISSPNK HGRLILSCAK TSETTVTAKS GDGNHKVPTE SSPLPTATFP
101: KGFEALITEV CDDTEVAELK LKVGDFELHL KRNIEAPVVP APVVSAPPPP PPPPSASKPS ISSTAAPAAS PGKSTSGKIS PFTNVAAEKS AKLAALESTG
201: ASGYVLVSCP TVGSFRRART LKGKKQPPAC KEGDIIKEGQ IIGFLDQFGT ELPVRSDAAG EVLKILFNDG EAVGYGDPLI AVLPSFHGIN

Best Arabidopsis Sequence Match ( AT3G56130.1 )
(BLAST)

001: MASSAALGSL HQTLGSAINS QSEVHSLSGN WSASGNSCVP RWRLSNRNSN YRLVLRAKAA KSSTTTISDG SSDASVSDGK KTVRRITFPK EVEALVHEMC
101: DETEVAVLQL KVGDFEMNLK RKIGAATNPI PVADISPTVA PPIPSEPMNK SASSAPSPSQ AKPSSEKVSP FKNTSYGKPA KLAALEASGS TNYVLVTSPA
201: VGKFQRSRTV KGKKQSPSCK EGDAIKEGQV IGYLHQLGTE LPVTSDVAGE VLKLLSDDGD SVGYGDPLVA VLPSFHDINI Q

Arabidopsis Description

AT3g56130/F18O21_90 [Source:UniProtKB/TrEMBL;Acc:Q93W03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.