CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27243	Canola	plastid	87.98	84.07
AT3G56130.1	Thale cress	plastid	70.54	64.77
KRG97672	Soybean	endoplasmic reticulum	49.22	43.64
GSMUA_Achr1P26670_001	Banana	mitochondrion, plastid	45.74	42.75
KRH31200	Soybean	mitochondrion	48.45	42.09
Solyc06g050590.2.1	Tomato	plastid	45.35	40.34
VIT_13s0067g02060.t01	Wine grape	plastid	44.96	40.28
PGSC0003DMT400061547	Potato	plastid	44.57	39.79
GSMUA_Achr8P33740_001	Banana	plastid	41.86	38.85
GSMUA_Achr9P16490_001	Banana	plastid	42.64	38.6
CDY20144	Canola	plastid	24.42	25.3
CDY30096	Canola	plastid	24.03	24.41
CDX97694	Canola	plastid	23.64	24.11
CDY21861	Canola	plastid	23.64	24.02

Protein Annotations

EnsemblPlants:CDX72171	EnsemblPlantsGene:GSBRNA2T00155998001	Gene3D:2.40.50.100	InterPro:Biotin_lipoyl	InterPro:IPR000089	InterPro:Single_hybrid_motif
PFAM:PF00364	ProteinID:CDX72171	ProteinID:CDX72171.1	SEG:seg	SUPFAM:SSF51230	UniParc:UPI0004EDF9F7
MapMan:5.1.3.3	:	:	:	:	:

Description

BnaC08g27030D

Coordinates

chrLK031795:-:2804622..2806771

Molecular Weight (calculated)

27280.2 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.348

Length

258 amino acids

Sequence
(BLAST)

001: MESLGSLHQS LGSAVNVHSL SGKSCAPPRW SLFNRNTLVL RAESSKSSTT TKTDESSDAS NGTKTVRRTT FPKEVEALVH EMCDETEVGD FEMNLKRKIG
101: LAETPIPVPD ISPSVAPPIP SEPMNKSVSS SAAAATSPSK AKPAVSPFIN AAYRKSSKLA ALDASGSNNY VLVTSPSVGK FQRSRTVKGK KQGPTCKEGD
201: AIKEGQVIGY LHQLGKELPV TSDVAGEVLK LLSDDGDSVG YGEPLVAVLP SFHDINIQ

Best Arabidopsis Sequence Match ( AT3G56130.1 )
(BLAST)

001: MASSAALGSL HQTLGSAINS QSEVHSLSGN WSASGNSCVP RWRLSNRNSN YRLVLRAKAA KSSTTTISDG SSDASVSDGK KTVRRITFPK EVEALVHEMC
101: DETEVAVLQL KVGDFEMNLK RKIGAATNPI PVADISPTVA PPIPSEPMNK SASSAPSPSQ AKPSSEKVSP FKNTSYGKPA KLAALEASGS TNYVLVTSPA
201: VGKFQRSRTV KGKKQSPSCK EGDAIKEGQV IGYLHQLGTE LPVTSDVAGE VLKLLSDDGD SVGYGDPLVA VLPSFHDINI Q

Arabidopsis Description

AT3g56130/F18O21_90 [Source:UniProtKB/TrEMBL;Acc:Q93W03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.