CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 7

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31200	Soybean	mitochondrion	90.38	88.55
VIT_13s0067g02060.t01	Wine grape	plastid	57.73	58.33
Solyc06g050590.2.1	Tomato	plastid	56.01	56.21
PGSC0003DMT400061547	Potato	plastid	55.33	55.71
AT3G56130.1	Thale cress	plastid	50.52	52.31
GSMUA_Achr1P26670_001	Banana	mitochondrion, plastid	48.45	51.09
Bra007218.1-P	Field mustard	plastid	46.74	50.37
CDY27243	Canola	plastid	46.74	50.37
CDX72171	Canola	plastid	43.64	49.22
GSMUA_Achr8P33740_001	Banana	plastid	44.67	46.76
GSMUA_Achr9P16490_001	Banana	plastid	45.36	46.32
KRH09764	Soybean	plastid	27.84	30.11
KRH23555	Soybean	plasma membrane	28.87	28.19

Protein Annotations

EMBL:ACUP02010805	EMBL:BT094733	EnsemblPlants:KRG97672	EnsemblPlantsGene:GLYMA_18G023300	EntrezGene:100792471	Gene3D:2.40.50.100
InterPro:Biotin_lipoyl	InterPro:IPR000089	InterPro:Single_hybrid_motif	PANTHER:PTHR43416	PANTHER:PTHR43416:SF4	PFAM:PF00364
ProteinID:KRG97672	ProteinID:KRG97672.1	SEG:seg	SUPFAM:SSF51230	UniParc:UPI0001B16518	UniProt:C6TB35
MapMan:5.1.3.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:1693927..1700722

Molecular Weight (calculated)

31541.8 Da

IEP (calculated)

9.534

GRAVY (calculated)

-0.426

Length

291 amino acids

Sequence
(BLAST)

001: MESSPAIRSF HYPMGTMSHV RACLEKQAVL PIHNARWNSK RRLFIQHLAY GQKHINSHMK GKSTLVSSAK TAEAINTSNS DASSDNTPQG SLEKKPLQTA
101: TFPNGFEALV LEVCDETEIA ELKVKVGDFE MHIKRNIGAT KVPLSNISPT TPPPIPSKPM DESAPNSLPP SPPKSSPEKN NPFANVSKEK SPKLAALEAS
201: GTNTYVLVTS PTVGLFRRGR TVKGKKQPPI CKEGDVIKEG QVIGYLDQFG TGLPIRSDVA GEVLKLLVED GEPVGYGDRL IAVLPSFHDI K

Best Arabidopsis Sequence Match ( AT3G56130.1 )
(BLAST)

001: MASSAALGSL HQTLGSAINS QSEVHSLSGN WSASGNSCVP RWRLSNRNSN YRLVLRAKAA KSSTTTISDG SSDASVSDGK KTVRRITFPK EVEALVHEMC
101: DETEVAVLQL KVGDFEMNLK RKIGAATNPI PVADISPTVA PPIPSEPMNK SASSAPSPSQ AKPSSEKVSP FKNTSYGKPA KLAALEASGS TNYVLVTSPA
201: VGKFQRSRTV KGKKQSPSCK EGDAIKEGQV IGYLHQLGTE LPVTSDVAGE VLKLLSDDGD SVGYGDPLVA VLPSFHDINI Q

Arabidopsis Description

AT3g56130/F18O21_90 [Source:UniProtKB/TrEMBL;Acc:Q93W03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.