Factsheet for VIT_13s0067g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050590.2.1	Tomato	plastid	58.68	58.28
PGSC0003DMT400061547	Potato	plastid	58.33	58.13
KRG97672	Soybean	endoplasmic reticulum	58.33	57.73
KRH31200	Soybean	mitochondrion	57.99	56.23
GSMUA_Achr1P26670_001	Banana	mitochondrion, plastid	48.26	50.36
Bra007218.1-P	Field mustard	plastid	44.44	47.41
CDY27243	Canola	plastid	44.44	47.41
AT3G56130.1	Thale cress	plastid	45.14	46.26
GSMUA_Achr8P33740_001	Banana	plastid	44.1	45.68
CDX72171	Canola	plastid	40.28	44.96
GSMUA_Achr9P16490_001	Banana	plastid	43.75	44.21
VIT_09s0002g06120.t01	Wine grape	plastid	28.12	29.56

Protein Annotations

EntrezGene:100258686	wikigene:100258686	Gene3D:2.40.50.100	MapMan:5.1.3.3	InterPro:Biotin_lipoyl	ProteinID:CBI25413
ProteinID:CBI25413.3	UniProt:D7T4I1	EMBL:FN595514	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0045717	InterPro:IPR000089	EntrezGene:LOC100258686	wikigene:LOC100258686
PFAM:PF00364	PANTHER:PTHR43416	PANTHER:PTHR43416:SF4	SUPFAM:SSF51230	InterPro:Single_hybrid_motif	TIGR:TC60643
UniParc:UPI00015CA865	ArrayExpress:VIT_13s0067g02060	EnsemblPlantsGene:VIT_13s0067g02060	EnsemblPlants:VIT_13s0067g02060.t01	unigene:Vvi.24496	RefSeq:XP_002278151
RefSeq:XP_002278151.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1157837..1164607

Molecular Weight (calculated)

30523.8 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.129

Length

288 amino acids

Sequence
(BLAST)

001: MESVAVLRSV HYSVGAISNV RSFIERPTMV PMYNATWPTS NTLHVQGLTV GGKLISSPIK QKGTLISCVK TPETAGTAKC DDGNPQGLLQ KDTLPSATFP
101: NGFEALILEV CDETDVAELK LKVGDFEMHL RRNVGVTNPP MPVIAPTAPP TVSAKPPVES APAAPPSLPP KPSQEKISPF TKSLLEKPSK LRALEASGAN
201: AYVLVSSPTV GSFRTGRTLK GKRQPPVCKE GDVIKEGQVI GYLDQFGSEL PVKSDTAGEV LKVIFNDGEA VGYGDPLVAV LPSFHGIE

Best Arabidopsis Sequence Match ( AT3G56130.1 )
(BLAST)

001: MASSAALGSL HQTLGSAINS QSEVHSLSGN WSASGNSCVP RWRLSNRNSN YRLVLRAKAA KSSTTTISDG SSDASVSDGK KTVRRITFPK EVEALVHEMC
101: DETEVAVLQL KVGDFEMNLK RKIGAATNPI PVADISPTVA PPIPSEPMNK SASSAPSPSQ AKPSSEKVSP FKNTSYGKPA KLAALEASGS TNYVLVTSPA
201: VGKFQRSRTV KGKKQSPSCK EGDAIKEGQV IGYLHQLGTE LPVTSDVAGE VLKLLSDDGD SVGYGDPLVA VLPSFHDINI Q

Arabidopsis Description

AT3g56130/F18O21_90 [Source:UniProtKB/TrEMBL;Acc:Q93W03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.