Factsheet for VIT_09s0002g06120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G15690.2	Thale cress	plastid	56.57	58.94
Bra027217.1-P	Field mustard	plastid	55.47	57.58
KRH09764	Soybean	plastid	56.2	57.25
Solyc06g068010.2.1	Tomato	plastid	56.57	56.57
Bra021128.1-P	Field mustard	plastid	50.73	55.82
CDY20144	Canola	plastid	50.73	55.82
PGSC0003DMT400073476	Potato	plastid	55.47	55.47
AT1G52670.1	Thale cress	plastid	55.11	55.11
CDY21861	Canola	plastid	50.37	54.33
CDY30096	Canola	plastid	50.0	53.94
KRH23555	Soybean	plasma membrane	58.03	53.36
CDX97694	Canola	plastid	48.18	52.17
VIT_13s0067g02060.t01	Wine grape	plastid	29.56	28.12

Protein Annotations

EntrezGene:100242878	wikigene:100242878	Gene3D:2.40.50.100	MapMan:5.1.3.3	InterPro:Biotin_lipoyl	ProteinID:CBI36270
ProteinID:CBI36270.3	UniProt:D7U0X4	EMBL:FN596494	InterPro:IPR000089	EntrezGene:LOC100242878	wikigene:LOC100242878
PFAM:PF00364	PANTHER:PTHR43416	PANTHER:PTHR43416:SF4	SUPFAM:SSF51230	InterPro:Single_hybrid_motif	TIGR:TC61725
UniParc:UPI0001983F85	ArrayExpress:VIT_09s0002g06120	EnsemblPlantsGene:VIT_09s0002g06120	EnsemblPlants:VIT_09s0002g06120.t01	unigene:Vvi.6394	RefSeq:XP_002285378
RefSeq:XP_002285378.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:5941919..5949464

Molecular Weight (calculated)

29342.4 Da

IEP (calculated)

5.524

GRAVY (calculated)

-0.124

Length

274 amino acids

Sequence
(BLAST)

001: MASCGLGAPS IKISNLDLVR TRLGVLQSRF SIRTSTAWTP LNNSGLVISQ RSQKAIILCR GSSSEAESAV NLEDGSEETK SSGLTSQLTP NAYEVESLLS
101: EICDTTSIAE FELKLGGFRL YMMRDLAGKI EPTPPPSSTP VTVSLNDEAP KLNGSASMSS LPISKSALLL GQSQTLLDRA ADEGLMILQS PKVGFFRRSR
201: TIKGKRAPPS CKEKQIVKEG QVLCYIEQLG GEIPIESDVS GEVIKILRED GEPVGYGDAL IAILPSFPGI KKLQ

Best Arabidopsis Sequence Match ( AT3G15690.2 )
(BLAST)

001: MASCSLGVPK IKISAVDLSR VRSGSLLIPY NQRSLLRQRP VKYLSLKTTF GSVKAVQVST VPTAETSATI EVKDSKEIKS SRLNAQLVPK PSEVEALVTE
101: ICDSSSIAEF ELKLGGFRLY VARNIADNSS LQPPPTPAVT ASNATTESPE SNGSASSTSL AISKPASSAA DQGLMILQSP KVGFFRRSKT IKGKRLPSSC
201: KEKDQVKEGQ ILCYIEQLGG QFPIESDVTG EVVKILREDG EPVGYNDALI SILPSFPGIK KLQ

Arabidopsis Description

Putative acetyl-CoA carboxylase biotin-containing subunit [Source:UniProtKB/TrEMBL;Acc:Q8GRT9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.