Factsheet for PGSC0003DMT400073476

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068010.2.1	Tomato	plastid	95.99	95.99
VIT_09s0002g06120.t01	Wine grape	plastid	55.47	55.47
KRH09764	Soybean	plastid	52.92	53.9
Bra027217.1-P	Field mustard	plastid	49.27	51.14
AT3G15690.2	Thale cress	plastid	48.54	50.57
KRH23555	Soybean	plasma membrane	53.65	49.33
AT1G52670.1	Thale cress	plastid	48.91	48.91
Bra021128.1-P	Field mustard	plastid	42.34	46.59
CDY20144	Canola	plastid	42.34	46.59
CDY30096	Canola	plastid	43.07	46.46
CDX97694	Canola	plastid	42.34	45.85
CDY21861	Canola	plastid	41.61	44.88
PGSC0003DMT400061547	Potato	plastid	33.21	31.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400073476	EnsemblPlantsGene:PGSC0003DMG400028542	EntrezGene:102593052	Gene3D:2.40.50.100	InterPro:Biotin_lipoyl	InterPro:IPR000089
InterPro:Single_hybrid_motif	PANTHER:PTHR43416	PANTHER:PTHR43416:SF4	PFAM:PF00364	PGSC:PGSC0003DMG400028542	RefSeq:XP_006356200.1
SEG:seg	SUPFAM:SSF51230	UniParc:UPI000296CF6C	UniProt:M1CS34	MapMan:5.1.3.3	:

Description

Biotin/lipoyl attachment [Source:PGSC_GENE;Acc:PGSC0003DMG400028542]

Coordinates

chr6:+:49734858..49740637

Molecular Weight (calculated)

29042.9 Da

IEP (calculated)

8.958

GRAVY (calculated)

-0.158

Length

274 amino acids

Sequence
(BLAST)

001: MAACGFGASG LKLTSLNLGS TKPKLSVVHN LRTKKFVQND GLLLTTKSRK TFDCRCSTVE AKPAAATAIP KSDDSSSKIV SSETASPLIP NSYEVESLLA
101: EICDTTSIAE VDLKLGGFRL YVKRDLTGQS TTSLPPITSP VSIPSSVEVA DSNGSASSTS LAITKSSPPS DGIQTMIEKA ADEGLVIIQS PRVGFFRRSR
201: TIKGKRAPPA CKEKQQVKEG QVVFYIEQLG GELPVESDVS GEVIKILRKD GDPVGYGDPL ISILPSFPGI KKLQ

Best Arabidopsis Sequence Match ( AT3G15690.2 )
(BLAST)

001: MASCSLGVPK IKISAVDLSR VRSGSLLIPY NQRSLLRQRP VKYLSLKTTF GSVKAVQVST VPTAETSATI EVKDSKEIKS SRLNAQLVPK PSEVEALVTE
101: ICDSSSIAEF ELKLGGFRLY VARNIADNSS LQPPPTPAVT ASNATTESPE SNGSASSTSL AISKPASSAA DQGLMILQSP KVGFFRRSKT IKGKRLPSSC
201: KEKDQVKEGQ ILCYIEQLGG QFPIESDVTG EVVKILREDG EPVGYNDALI SILPSFPGIK KLQ

Arabidopsis Description

Putative acetyl-CoA carboxylase biotin-containing subunit [Source:UniProtKB/TrEMBL;Acc:Q8GRT9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.