Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
plastid: 22908117 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073476 | Potato | plastid | 95.99 | 95.99 |
| VIT_09s0002g06120.t01 | Wine grape | plastid | 56.57 | 56.57 |
| KRH09764 | Soybean | plastid | 52.19 | 53.16 |
| Bra027217.1-P | Field mustard | plastid | 49.27 | 51.14 |
| AT3G15690.2 | Thale cress | plastid | 48.18 | 50.19 |
| KRH23555 | Soybean | plasma membrane | 52.92 | 48.66 |
| AT1G52670.1 | Thale cress | plastid | 48.54 | 48.54 |
| Bra021128.1-P | Field mustard | plastid | 42.7 | 46.99 |
| CDY20144 | Canola | plastid | 42.7 | 46.99 |
| CDY30096 | Canola | plastid | 43.07 | 46.46 |
| CDX97694 | Canola | plastid | 42.34 | 45.85 |
| CDY21861 | Canola | plastid | 41.61 | 44.88 |
| Solyc06g050590.2.1 | Tomato | plastid | 31.75 | 30.0 |
Protein Annotations
| EnsemblPlants:Solyc06g068010.2.1 | EnsemblPlantsGene:Solyc06g068010.2 | Gene3D:2.40.50.100 | InterPro:Biotin_lipoyl | InterPro:IPR000089 | InterPro:Single_hybrid_motif |
| PANTHER:PTHR43416 | PANTHER:PTHR43416:SF4 | PFAM:PF00364 | SEG:seg | SUPFAM:SSF51230 | UniParc:UPI0002766170 |
| UniProt:K4C7X6 | MapMan:5.1.3.3 | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:42155487..42160553
Molecular Weight (calculated)
29028.6 Da
IEP (calculated)
8.190
GRAVY (calculated)
-0.163
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACGFGASG LKLTSLNLGS TKPKLSVVHN LRTKKFVQSD GLLLTTKSRK TFDCRCSTVE AESVAATAIP NSDDSSSKIV SSETASPLTP NSYEVESLLT
101: EICDTTSIAE VDLKLGGFRL YVKRDLTGQS TTSLPPISSP VSVSSSVEVA DSNGSASSTS LAITKSSPPS DGIQTMIEKA ADEGLVIIQS PRVGFFRRSR
201: TIKGKRAPPA CKEKQQVKEG QVVFYIEQLG GELPVESDVS GEVIRILRKD GDPVGYGDPL ISILPSFPGI KKLQ
101: EICDTTSIAE VDLKLGGFRL YVKRDLTGQS TTSLPPISSP VSVSSSVEVA DSNGSASSTS LAITKSSPPS DGIQTMIEKA ADEGLVIIQS PRVGFFRRSR
201: TIKGKRAPPA CKEKQQVKEG QVVFYIEQLG GELPVESDVS GEVIRILRKD GDPVGYGDPL ISILPSFPGI KKLQ
001: MNSCSLGAPK VRIFATNFSR LRCGNLLIPN NQRLFVDQSP MKYLSLRTTL RSVKAIQLST VPPAETEAIA DVKDSDETKS TVVNTHLMPK SSEVEALISE
101: ITDSSSIAEF ELKLGGFRLY VARKLTDESS PPPQQIQPVV AASATPEGVH TNGSATSSSL AITKTSSSSA DRPQTLANKA ADQGLVILQS PTVGYFRRSK
201: TIKGKRTPTI CKEKDIVKEG QVLCYIEQLG GQIPVESDVS GEIVKILRED GEPVGYNDAL ITVLPSFPGI KKLQ
101: ITDSSSIAEF ELKLGGFRLY VARKLTDESS PPPQQIQPVV AASATPEGVH TNGSATSSSL AITKTSSSSA DRPQTLANKA ADQGLVILQS PTVGYFRRSK
201: TIKGKRTPTI CKEKDIVKEG QVLCYIEQLG GQIPVESDVS GEIVKILRED GEPVGYNDAL ITVLPSFPGI KKLQ
Arabidopsis Description
Is a member of the PF [Source:UniProtKB/TrEMBL;Acc:Q8VZ68]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.