Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G15690.2 | Thale cress | plastid | 67.52 | 70.34 |
| VIT_09s0002g06120.t01 | Wine grape | plastid | 55.11 | 55.11 |
| PGSC0003DMT400073476 | Potato | plastid | 48.91 | 48.91 |
| Solyc06g068010.2.1 | Tomato | plastid | 48.54 | 48.54 |
| KRH09764 | Soybean | plastid | 45.26 | 46.1 |
| KRH23555 | Soybean | plasma membrane | 46.72 | 42.95 |
| AT3G56130.1 | Thale cress | plastid | 27.74 | 27.05 |
Protein Annotations
| Gene3D:2.40.50.100 | MapMan:5.1.3.3 | EntrezGene:841699 | UniProt:A0A178WEY5 | ProteinID:AEE32836.1 | EMBL:AK227234 |
| ArrayExpress:AT1G52670 | EnsemblPlantsGene:AT1G52670 | RefSeq:AT1G52670 | TAIR:AT1G52670 | RefSeq:AT1G52670-TAIR-G | EnsemblPlants:AT1G52670.1 |
| TAIR:AT1G52670.1 | EMBL:AY065213 | EMBL:AY088184 | EMBL:AY122930 | Unigene:At.11641 | InterPro:Biotin_lipoyl |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | InterPro:IPR000089 | RefSeq:NP_564612.1 | ProteinID:OAP15943.1 |
| PFAM:PF00364 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43416 | PANTHER:PTHR43416:SF4 | UniProt:Q8VZ68 | SUPFAM:SSF51230 |
| InterPro:Single_hybrid_motif | UniParc:UPI000009E53B | SEG:seg | : | : | : |
Description
Is a member of the PF [Source:UniProtKB/TrEMBL;Acc:Q8VZ68]
Coordinates
chr1:-:19614931..19617611
Molecular Weight (calculated)
29575.5 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.221
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSCSLGAPK VRIFATNFSR LRCGNLLIPN NQRLFVDQSP MKYLSLRTTL RSVKAIQLST VPPAETEAIA DVKDSDETKS TVVNTHLMPK SSEVEALISE
101: ITDSSSIAEF ELKLGGFRLY VARKLTDESS PPPQQIQPVV AASATPEGVH TNGSATSSSL AITKTSSSSA DRPQTLANKA ADQGLVILQS PTVGYFRRSK
201: TIKGKRTPTI CKEKDIVKEG QVLCYIEQLG GQIPVESDVS GEIVKILRED GEPVGYNDAL ITVLPSFPGI KKLQ
101: ITDSSSIAEF ELKLGGFRLY VARKLTDESS PPPQQIQPVV AASATPEGVH TNGSATSSSL AITKTSSSSA DRPQTLANKA ADQGLVILQS PTVGYFRRSK
201: TIKGKRTPTI CKEKDIVKEG QVLCYIEQLG GQIPVESDVS GEIVKILRED GEPVGYNDAL ITVLPSFPGI KKLQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.