Factsheet for Solyc03g007810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016844	Potato	plastid	98.79	98.79
KRH38304	Soybean	cytosol	53.29	89.02
VIT_16s0050g02180.t01	Wine grape	plastid	86.85	87.15
Bra003095.1-P	Field mustard	mitochondrion	53.63	84.01
KRG91615	Soybean	nucleus	83.56	84.0
KRH08770	Soybean	nucleus, plastid	83.22	83.36
AT5G52920.1	Thale cress	plastid	83.22	83.07
KRH35201	Soybean	plastid	82.87	82.87
CDY60911	Canola	plastid	82.53	82.24
CDY66652	Canola	plastid	82.35	82.07
CDY19645	Canola	plastid	82.01	81.58
Os01t0660300-01	Rice	plastid	50.35	79.29
Bra022618.1-P	Field mustard	plastid	82.53	78.71
Bra040933.1-P	Field mustard	plastid	82.53	78.71
Zm00001d043986_P005	Maize	plastid	78.55	78.68
TraesCS3A01G239300.1	Wheat	plastid	78.55	78.68
TraesCS3B01G267800.2	Wheat	plastid	78.37	78.51
TraesCS3D01G239500.1	Wheat	plastid	78.2	78.34
EES03378	Sorghum	plastid	78.55	78.28
KRH44705	Soybean	cytosol	26.47	78.06
KRH18451	Soybean	cytosol	33.39	75.69
GSMUA_Achr7P24720_001	Banana	plastid	78.55	75.29
HORVU3Hr1G059470.7	Barley	plastid	75.43	75.04
KRH38305	Soybean	plastid	29.24	73.48
Solyc08g077180.2.1	Tomato	plastid	65.57	65.34
KRH24949	Soybean	cytosol, peroxisome, plastid	43.43	46.74
Solyc09g082970.2.1	Tomato	plastid	38.24	37.27
Solyc04g008740.2.1	Tomato	plastid	31.49	35.69
Solyc01g049650.2.1	Tomato	cytosol, mitochondrion, plastid	30.45	35.06
Solyc01g106780.2.1	Tomato	cytosol, plastid	33.56	33.74
Solyc10g083720.1.1	Tomato	plastid	23.36	25.62
Solyc11g007690.1.1	Tomato	cytosol, extracellular, nucleus	21.63	25.51
Solyc09g008840.2.1	Tomato	unclear	23.01	25.24
Solyc06g051930.2.1	Tomato	plastid	17.99	13.76

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:2.40.33.10	MapMan:3.12.8	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	MapMan:5.1.2.1	GO:GO:0000003	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0006629
GO:GO:0006633	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009791	GO:GO:0009987	GO:GO:0010431
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	GO:GO:0046686	GO:GO:0048316
InterPro:IPR015806	InterPro:IPR036918	UniProt:K4BEK3	PFAM:PF00224	PFAM:PF02887	PRINTS:PR01050
ScanProsite:PS00110	PANTHER:PTHR11817	PANTHER:PTHR11817:SF2	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf
InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800
SUPFAM:SSF51621	SUPFAM:SSF52935	EnsemblPlantsGene:Solyc03g007810.2	EnsemblPlants:Solyc03g007810.2.1	TIGRFAMs:TIGR01064	UniParc:UPI0002768324

Description

Plastidial pyruvate kinase 2 [Source:Projected from Arabidopsis thaliana (AT5G52920) UniProtKB/Swiss-Prot;Acc:Q9FLW9]

Coordinates

chr3:-:2363561..2372504

Molecular Weight (calculated)

63459.6 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.172

Length

578 amino acids

Sequence
(BLAST)

001: MAQVVATRSI QSSFSSPSHG SLQSQVEKLK PPSLASKVLG RNERSNSCRA VRVNMPQIIA RRSTRAEPQV LPVSPEDVPK SEEQEQYLQA IQQLGDTSVG
101: MWSKPTVRRK TKIVCTIGPS TNTREMIWKL AEAGMNVARM NMSHGDHASH QKVIDLVKEY NAQSKDNVIA IMLDTKGPEV RSGDLPQPIM LKPGQEFTFT
201: IQRGVGTADC VSVNYDDFVN DVEVGDMLLV DGGMMSLQVK SKTEESVKCE VIDGGELKSR RHLNVRGKSA TLPSITEKDW DDIKFGVDNN IDFYAVSFVK
301: DAAVVHELKN YLKSCGADIH VIVKIESADS IPNLHSIITA SDGAMVARGD LGAELPIEEV PLLQEEIINI CRSMGKAVIV ATNMLESMIV HPTPTRAEVS
401: DIAIAVREGA DAVMLSGETA HGKFPLKAVK VMHTVSLRTE ATIVGGETPT NLGQAFKNHM SEMFAFHATM MSNTLGTSIV VFTRTGFMAI LLSHYRPSGT
501: IFAFTNDKKI QQRLASYQGV CPIYMEFLDC AEETFTSALS LLQKQGMVKE GEQVALVQSG RQPIWRLQST HNIQVRKV

Best Arabidopsis Sequence Match ( AT5G52920.1 )
(BLAST)

001: MAQVVATRSI QGSMLSPNGG SVSTRSEKLL KPASFAVKVL GNEAKRSGRV SVRSRRVVDT TVRSARVETE VIPVSPEDVP NREEQLERLL EMQQFGDTSV
101: GMWSKPTVRR KTKIVCTVGP STNTREMIWK LAEAGMNVAR MNMSHGDHAS HKKVIDLVKE YNAQTKDNTI AIMLDTKGPE VRSGDLPQPI MLDPGQEFTF
201: TIERGVSTPS CVSVNYDDFV NDVEAGDMLL VDGGMMSFMV KSKTKDSVKC EVVDGGELKS RRHLNVRGKS ATLPSITEKD WEDIKFGVEN KVDFYAVSFV
301: KDAQVVHELK KYLQNSGADI HVIVKIESAD SIPNLHSIIT ASDGAMVARG DLGAELPIEE VPILQEEIIN LCRSMGKAVI VATNMLESMI VHPTPTRAEV
401: SDIAIAVREG ADAVMLSGET AHGKFPLKAA GVMHTVALRT EATITSGEMP PNLGQAFKNH MSEMFAYHAT MMSNTLGTST VVFTRTGFMA ILLSHYRPSG
501: TIYAFTNEKK IQQRLALYQG VCPIYMEFTD DAEETFANAL ATLLKQGMVK KGEEIAIVQS GTQPIWRSQS THNIQVRKV

Arabidopsis Description

PKP2Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178U9G2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.