CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35201	Soybean	plastid	97.91	97.4
KRH38304	Soybean	cytosol	56.35	93.64
KRH08770	Soybean	nucleus, plastid	87.83	87.52
VIT_16s0050g02180.t01	Wine grape	plastid	84.35	84.2
Solyc03g007810.2.1	Tomato	plastid	84.0	83.56
PGSC0003DMT400016844	Potato	plastid	83.48	83.05
Bra003095.1-P	Field mustard	mitochondrion	53.22	82.93
KRH44705	Soybean	cytosol	28.17	82.65
AT5G52920.1	Thale cress	plastid	81.57	81.0
Os01t0660300-01	Rice	plastid	51.3	80.38
CDY19645	Canola	plastid	80.87	80.03
CDY60911	Canola	plastid	80.7	80.0
CDY66652	Canola	plastid	80.52	79.83
TraesCS3A01G239300.1	Wheat	plastid	79.13	78.86
TraesCS3D01G239500.1	Wheat	plastid	78.96	78.68
TraesCS3B01G267800.2	Wheat	plastid	78.78	78.51
KRH18451	Soybean	cytosol	34.78	78.43
Zm00001d043986_P005	Maize	plastid	78.61	78.34
EES03378	Sorghum	plastid	78.61	77.93
KRH38305	Soybean	plastid	30.96	77.39
Bra022618.1-P	Field mustard	plastid	80.7	76.57
Bra040933.1-P	Field mustard	plastid	80.7	76.57
HORVU3Hr1G059470.7	Barley	plastid	76.0	75.22
GSMUA_Achr7P24720_001	Banana	plastid	78.78	75.12
KRH77227	Soybean	plastid	64.17	67.71
KRH28271	Soybean	cytosol	28.17	62.31
KRH24949	Soybean	cytosol, peroxisome, plastid	45.22	48.42
KRG92440	Soybean	cytosol, nucleus	34.78	44.05
KRH34357	Soybean	nucleus	35.83	43.37
KRH70138	Soybean	cytosol	7.3	43.3
KRG93166	Soybean	cytosol	31.13	35.1
KRH50504	Soybean	mitochondrion	30.43	34.93
KRG89466	Soybean	endoplasmic reticulum, nucleus	30.43	34.86
KRH56500	Soybean	nucleus	30.78	34.64
KRH08482	Soybean	cytosol	30.61	34.24
KRH35631	Soybean	plastid	33.91	33.51
KRG91145	Soybean	plastid	33.74	33.33
KRH70137	Soybean	cytosol, endoplasmic reticulum	20.52	28.71
KRH71733	Soybean	cytosol	6.96	28.57
KRH20011	Soybean	nucleus	23.65	25.81
KRH32634	Soybean	endoplasmic reticulum	23.65	25.81
KRG92070	Soybean	endoplasmic reticulum, nucleus	23.48	25.67
KRH34711	Soybean	endoplasmic reticulum	23.3	25.48
KRH67815	Soybean	cytosol, endoplasmic reticulum	23.3	25.43
KRG96114	Soybean	cytosol	23.48	24.91
KRH57945	Soybean	cytosol, endoplasmic reticulum	8.0	23.96
KRH57981	Soybean	cytosol	11.65	22.11
KRH71730	Soybean	endoplasmic reticulum	7.3	21.76

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	EntrezGene:100809327	Gene3D:2.40.33.10	MapMan:3.12.8
Gene3D:3.20.20.60	Gene3D:3.40.1380.20	MapMan:5.1.2.1	EMBL:ACUP02012693	EnsemblPlantsGene:GLYMA_20G164500	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	UniProt:I1NH00
InterPro:IPR015806	InterPro:IPR036918	EnsemblPlants:KRG91615	ProteinID:KRG91615	ProteinID:KRG91615.1	PFAM:PF00224
PFAM:PF02887	PRINTS:PR01050	ScanProsite:PS00110	PANTHER:PTHR11817	PANTHER:PTHR11817:SF2	MetaCyc:PWY-1042
MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723	MetaCyc:PWY-6142	MetaCyc:PWY-6886	MetaCyc:PWY-6901
MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf
InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800
SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064	UniParc:UPI000233D8F4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:40198436..40203741

Molecular Weight (calculated)

63174.1 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.187

Length

575 amino acids

Sequence
(BLAST)

001: MSQVVATRSI HSSLTRPTSG SAHHRAQTLL KPPTFASKLF GAQRNNPSKV CSRSCLVNAR KSAPAKVVPV SPEDDSKIEE ELQHLRGMQQ LGDTSVGMWS
101: KPTFRRKTKV VCTIGPSTNT REMIWKLAEA GMNVARLNMS HGDHASHQKI IDLVKEYNAQ SKDNVIAIML DTKGPEVRSG DLPQPINLTT GQEFTFTIRR
201: GVGTADCVSV NYDDFVNDVD VGDMLLVDGG MMSLVVKSKT EDSVKCEVVD GGELKSRRHL NVRGKSATLP SITEKDWDDI KFGVDNKVDF YAVSFVKDAQ
301: VVHELKNYLK SCDADIHVIV KIESADSIPN LHSIITASDG AMVARGDLGA ELPIEEVPLL QEEIITICRS MGKAVIVATN MLESMIVHPT PTRAEVSDIA
401: IAVREGSDAI MLSGETAHGK FPLKAVKVMH TVALRTEATI PGGQMPPNIG QVFKNHMSEM FAYHATMMSN TLGTSTVVFT RSGFMAILLS HYRPSGTIFA
501: FTDQKRIQQR LALYQGVCPI YMEFSEDAEE TFTRALDLLQ KQGMVKSGEE VALVQSGTQP IWRFQSTHNI QVRTV

Best Arabidopsis Sequence Match ( AT5G52920.1 )
(BLAST)

001: MAQVVATRSI QGSMLSPNGG SVSTRSEKLL KPASFAVKVL GNEAKRSGRV SVRSRRVVDT TVRSARVETE VIPVSPEDVP NREEQLERLL EMQQFGDTSV
101: GMWSKPTVRR KTKIVCTVGP STNTREMIWK LAEAGMNVAR MNMSHGDHAS HKKVIDLVKE YNAQTKDNTI AIMLDTKGPE VRSGDLPQPI MLDPGQEFTF
201: TIERGVSTPS CVSVNYDDFV NDVEAGDMLL VDGGMMSFMV KSKTKDSVKC EVVDGGELKS RRHLNVRGKS ATLPSITEKD WEDIKFGVEN KVDFYAVSFV
301: KDAQVVHELK KYLQNSGADI HVIVKIESAD SIPNLHSIIT ASDGAMVARG DLGAELPIEE VPILQEEIIN LCRSMGKAVI VATNMLESMI VHPTPTRAEV
401: SDIAIAVREG ADAVMLSGET AHGKFPLKAA GVMHTVALRT EATITSGEMP PNLGQAFKNH MSEMFAYHAT MMSNTLGTST VVFTRTGFMA ILLSHYRPSG
501: TIYAFTNEKK IQQRLALYQG VCPIYMEFTD DAEETFANAL ATLLKQGMVK KGEEIAIVQS GTQPIWRSQS THNIQVRKV

Arabidopsis Description

PKP2Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178U9G2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.