CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25933
KRH27891

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36580.1	KRH25933	AT1G63970.1	21798944
AT2G36580.1	KRH27891	AT1G63970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32634	Soybean	endoplasmic reticulum	98.86	98.86
KRH57945	Soybean	cytosol, endoplasmic reticulum	34.72	95.31
KRH67815	Soybean	cytosol, endoplasmic reticulum	94.5	94.5
VIT_08s0007g04170.t01	Wine grape	plastid	89.18	91.44
KRG96114	Soybean	cytosol	93.74	91.14
Os11t0148500-02	Rice	plasma membrane	90.89	90.89
GSMUA_Achr10P...	Banana	cytosol	90.7	90.7
AT3G52990.1	Thale cress	cytosol, plastid	89.75	89.75
CDY58286	Canola	cytosol, plastid	89.75	89.75
Bra028545.1-P	Field mustard	cytosol, plastid	89.75	89.75
CDX73585	Canola	cytosol, plastid	89.75	89.75
CDX78139	Canola	cytosol, plastid	89.56	89.56
Bra006965.1-P	Field mustard	cytosol, plastid	89.56	89.56
Bra019634.1-P	Field mustard	cytosol, plastid	89.56	89.56
KXG22956	Sorghum	cytosol, peroxisome, plastid	89.56	89.56
Os12t0145700-01	Rice	plasma membrane	89.56	89.56
CDY13321	Canola	cytosol, plastid	89.56	89.56
Zm00001d023379_P001	Maize	extracellular, plasma membrane	89.56	89.56
AT2G36580.1	Thale cress	cytosol, peroxisome, plastid	89.56	89.56
EES09257	Sorghum	cytosol, peroxisome, plastid	89.56	89.56
CDX67554	Canola	cytosol, plastid	89.37	89.37
CDX76243	Canola	cytosol, plastid	89.37	89.37
GSMUA_Achr11P...	Banana	plastid	87.1	89.3
TraesCS5D01G138800.1	Wheat	cytosol	89.18	89.18
TraesCS5A01G131100.1	Wheat	golgi	89.18	89.18
Zm00001d052494_P001	Maize	plasma membrane	88.99	88.99
TraesCS5B01G131000.1	Wheat	golgi, unclear	88.99	88.99
HORVU5Hr1G041120.7	Barley	cytosol	88.99	88.66
PGSC0003DMT400072411	Potato	cytosol	83.68	88.38
Solyc10g083720.1.1	Tomato	plastid	88.24	88.24
GSMUA_Achr6P13430_001	Banana	cytosol	88.24	87.9
PGSC0003DMT400006945	Potato	mitochondrion	82.73	87.37
Solyc09g008840.2.1	Tomato	unclear	87.29	87.29
KRH71730	Soybean	endoplasmic reticulum	31.88	87.05
GSMUA_Achr2P20210_001	Banana	plastid	87.48	84.43
KRG92070	Soybean	endoplasmic reticulum, nucleus	83.11	83.27
KRH34711	Soybean	endoplasmic reticulum	82.92	83.08
KRH71733	Soybean	cytosol	21.44	80.71
KRH57981	Soybean	cytosol	40.42	70.3
KRG93166	Soybean	cytosol	41.94	43.33
KRH70138	Soybean	cytosol	7.97	43.3
KRH56500	Soybean	nucleus	41.94	43.25
KRH50504	Soybean	mitochondrion	40.42	42.52
KRG89466	Soybean	endoplasmic reticulum, nucleus	40.23	42.23
KRH08482	Soybean	cytosol	38.71	39.69
KRH70137	Soybean	cytosol, endoplasmic reticulum	27.32	35.04
KRH38304	Soybean	cytosol	17.46	26.59
KRH44705	Soybean	cytosol	9.68	26.02
KRH18451	Soybean	cytosol	12.14	25.1
KRG92440	Soybean	cytosol, nucleus	21.25	24.67
KRH34357	Soybean	nucleus	22.01	24.42
KRG91615	Soybean	nucleus	25.81	23.65
KRH35201	Soybean	plastid	25.81	23.53
KRH77227	Soybean	plastid	23.72	22.94
KRH08770	Soybean	nucleus, plastid	24.86	22.7
KRG91145	Soybean	plastid	24.29	21.99
KRH35631	Soybean	plastid	24.1	21.82
KRH28271	Soybean	cytosol	10.63	21.54
KRH24949	Soybean	cytosol, peroxisome, plastid	18.03	17.69
KRH38305	Soybean	plastid	7.59	17.39

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	EntrezGene:100802271	Gene3D:2.40.33.10	Gene3D:3.20.20.60
Gene3D:3.40.1380.20	MapMan:50.2.7	EMBL:ACUP02008222	EnsemblPlantsGene:GLYMA_13G149800	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0030955	UniProt:I1LZE1	InterPro:IPR015806	InterPro:IPR036918	EnsemblPlants:KRH20011
ProteinID:KRH20011	ProteinID:KRH20011.1	PFAM:PF00224	PFAM:PF02887	PRINTS:PR01050	PANTHER:PTHR11817
PANTHER:PTHR11817:SF38	MetaCyc:PWY-1042	MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723	MetaCyc:PWY-6142
MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383	InterPro:Pyr_Knase
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf
SUPFAM:SSF50800	SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064	UniParc:UPI00023CE93C	:

Description

hypothetical protein

Coordinates

chr13:-:26329040..26335075

Molecular Weight (calculated)

57607.7 Da

IEP (calculated)

6.903

GRAVY (calculated)

0.006

Length

527 amino acids

Sequence
(BLAST)

001: MPSSHLLLEE PIRMVSILEP SKPSFFSAMT KIVGTLGPKS RSVETISGCL KAGMSVARFD FSWHDPEYHQ ETLENLKAAI KSTKKLCAVM LDTVGAEMQV
101: VNKSEKAISL EANGQVVLTP DQGQEASSEI LPINFDGLAK AVKKGDTIFI GQYLFTGSET TSVWLEVSEV KGQDVVCIIK NTATLAGSLF TLHASQIHID
201: LPTLTEKDQE VISSWGVKNK IDFLSLSYTR HAEDVRQARE FLSKLGDLSQ TQIFAKIENV EGLTHFDEIL QEADGIILSR GNLGIDLPPE KVFLFQKSAL
301: YKCNMAGKPA VLTRVVDSMT DNLRPTRAEA TDVANAVLDG SDAILLGAET LRGLYPIETI STVGRICSEA EKVFNQDLYF KRTVKYVGEP MTHLESIASS
401: AVRAAIKVKA SIIICFTSSG RAARLIAKYR PTMPVLSVVI PRLKTNQLKW SFSGAFEARQ SLIVRGLFPM LADPRHPAES TSATNESILK VALDHGKALG
501: VIKSHDRVVV CQKLGDASVV KIIELED

Best Arabidopsis Sequence Match ( AT3G52990.1 )
(BLAST)

001: MHSSHLLLEE PIRMASILEP SKSSFFPALT KIVGTLGPKS RSVEALSGCL KAGMSVARFD FSWGDADYHQ ETLDNLKVAV RSTKKLCAVM LDTVGPELQV
101: INKSEKAITL KADGLVTLTP NQDQEASSEV LPINFNGLAK AVKKGDTIFV GQYLFTGSET TSVWLEVDEV KGDDVICLSR NAATLAGSLF TLHSSQVHID
201: LPTLTEKDKE VISTWGVQNK IDFLSLSYCR HAEDVRQTRE MLKKLGDLSQ TQIFAKIENV EGLTHFDEIL QEADGIILSR GNLGIDLPPE KVFLFQKAAL
301: YKCNMAGKPA VLTRVVDSMT DNLRPTRAEA TDVANAVLDG SDAILLGAET LRGLYPVETI STVGRICAEA EKVFNQDLYF KKTVKYVGEP MTHLESIASS
401: AVRAAIKVKA SVIICFTSSG RAARLIAKYR PTMPVISVVI PRVKTNQLKW SFSGAFEARQ SLIVRGLFPM LADPRHPAES TSATNESVLK VALDHGKHAG
501: VIKSHDRVVV CQKVGDASVV KIIELED

Arabidopsis Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:Q94KE3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.